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13_1_20cm_4_scaffold_1153

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_1153_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2..811)
DNA (810bp) protein (270aa)
short chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase id=3960006 bin=GWA2_Methylomirabilis_73_35 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_20cm_4_scaffold_1153_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

964..2601
DNA (1638bp) protein (546aa)
o-succinylbenzoate--CoA ligase (EC:6.2.1.26); K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
medium-chain fatty-acid-CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] id=14625844 bin=bin7_NC10_sister species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
o-succinylbenzoate--CoA ligase (EC:6.2.1.26)
13_1_20cm_4_scaffold_1153_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2601..2948
DNA (348bp) protein (116aa)
id=14627642 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_20cm_4_scaffold_1153_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2945..4246
DNA (1302bp) protein (434aa)
putative acriflavine resistance protein AcrA Tax=GWC2_Rokubacteria_70_16_curated
Putative Acriflavine resistance protein acrA id=4810596 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative acriflavine resistance protein AcrA
13_1_20cm_4_scaffold_1153_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4248..7415
DNA (3168bp) protein (1056aa)
acrB; acriflavin resistance protein acrB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Acriflavin resistance protein acrB id=4810595 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
acrB; acriflavin resistance protein acrB
13_1_20cm_4_scaffold_1153_6
unknown

Not on your lists

comp(7634..7825)
DNA (192bp) protein (64aa)

This feature has no annotations

13_1_20cm_4_scaffold_1153_7
unknown

Not on your lists

comp(8126..8398)
DNA (273bp) protein (91aa)

This feature has no annotations

13_1_20cm_4_scaffold_1153_8
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(8417..8884)
DNA (468bp) protein (156aa)
Uncharacterized protein Tax=RBG_16_Armatimonadetes_67_12_curated
13_1_20cm_4_scaffold_1153_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

9358..9984
DNA (627bp) protein (209aa)
acrB; acriflavin resistance protein acrB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Acriflavin resistance protein acrB id=4810595 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acrB; acriflavin resistance protein acrB
13_1_20cm_4_scaffold_1153_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10010..10357
DNA (348bp) protein (116aa)
acrB; acriflavin resistance protein acrB Tax=GWA2_Rokubacteria_70_23_curated
Acriflavin resistance protein acrB id=3746805 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
acrB; acriflavin resistance protein acrB
13_1_20cm_4_scaffold_1153_11
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10451..11728
DNA (1278bp) protein (426aa)
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Putative uncharacterized protein id=2259308 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sugar ABC transporter substrate-binding protein
13_1_20cm_4_scaffold_1153_12
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11701..12513
DNA (813bp) protein (271aa)
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Binding-protein-dependent transport systems inner membrane component id=2259310 bin=GWA2_Methylomirabilis_73_35 species=Bradyrhizobium sp. STM 3843 genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_1153_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12513..13358
DNA (846bp) protein (282aa)
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Binding-protein-dependent transport systems inner membrane component id=3247809 bin=GWF2_Methylomirabilis_70_14 species=Variovorax paradoxus genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
binding-protein-dependent transport systems inner membrane component
13_1_20cm_4_scaffold_1153_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13383..13646
DNA (264bp) protein (88aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative elongation factor Tu domain 2 id=3247812 bin=GWF2_Methylomirabilis_70_14 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_1153_15
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13667..14398)
DNA (732bp) protein (244aa)
coenzyme PQQ biosynthesis protein C Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
13_1_20cm_4_scaffold_1153_16
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(14422..15216)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I1G0_CALAS
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
hypothetical protein
13_1_20cm_4_scaffold_1153_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15233..15880)
DNA (648bp) protein (216aa)
gltK1; protein GltK1; K10002 glutamate/aspartate transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GltK1 id=3247815 bin=GWF2_Methylomirabilis_70_14 species=Desulfobacterium autotrophicum genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
polar amino acid ABC transporter inner membrane protein
Displaying 17 items

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