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13_1_20cm_4_scaffold_2063

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_2063_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..160
DNA (159bp) protein (53aa)
rpoN; RNA polymerase factor sigma-54 (EC:2.7.7.6)
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor id=14625757 bin=bin7_NC10_sister species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_20cm_4_scaffold_2063_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

157..1059
DNA (903bp) protein (301aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UPF0042 nucleotide-binding protein DAMO_1192 id=3879946 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_2063_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1066..3159
DNA (2094bp) protein (698aa)
4-alpha-glucanotransferase Tax=GWA2_Rokubacteria_73_35_curated
4-alpha-glucanotransferase id=3879949 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
4-alpha-glucanotransferase
13_1_20cm_4_scaffold_2063_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3156..4196
DNA (1041bp) protein (347aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8); K15916 glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8)
Bifunctional phosphoglucose/phosphomannose isomerase id=3879951 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2063_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4278..5429
DNA (1152bp) protein (384aa)
metK; S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
metK; methionine adenosyltransferase (EC:2.5.1.6) id=14625753 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
metK; S-adenosylmethionine synthetase (EC:2.5.1.6)
13_1_20cm_4_scaffold_2063_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5574..6674
DNA (1101bp) protein (367aa)
adenosylhomocysteinase (EC:3.3.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
adenosylhomocysteinase (EC:3.3.1.1)
Adenosylhomocysteinase id=3462296 bin=GWA2_Methylomirabilis_73_35 species=Thermovibrio ammonificans genus=Thermovibrio taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_2063_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6694..9399
DNA (2706bp) protein (902aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
UPF0182 protein DAMO_1249 id=3462292 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
hypothetical protein
13_1_20cm_4_scaffold_2063_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9624..11951)
DNA (2328bp) protein (776aa)
YjgP/YjgQ family permease Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative permease id=3462289 bin=GWA2_Methylomirabilis_73_35 species=Terriglobus roseus genus=Terriglobus taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative permease
13_1_20cm_4_scaffold_2063_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11953..13065
DNA (1113bp) protein (371aa)
Valine--tRNA ligase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Valine--tRNA ligase id=4208290 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_2063_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


13062..13289
DNA (228bp) protein (76aa)
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Valine--tRNA ligase id=4810688 bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
valyl-tRNA synthetase
Displaying 10 items

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