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13_1_20cm_4_scaffold_456

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_456_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8..571)
DNA (564bp) protein (188aa)
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RI
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR id=4792710 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_456_2
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(630..1175)
DNA (546bp) protein (182aa)
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein id=14626506 bin=bin7_NC10_sister species=Deinococcus sp. 2009 genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_456_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(1175..1945)
DNA (771bp) protein (257aa)
xthA; exodeoxyribonuclease III (EC:3.1.11.2) Tax=GWA2_Rokubacteria_73_35_curated
Exodeoxyribonuclease III id=4792717 bin=GWC2_Methylomirabilis_70_16 species=Deinococcus peraridilitoris genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
exodeoxyribonuclease III
13_1_20cm_4_scaffold_456_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2024..3391)
DNA (1368bp) protein (456aa)
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=GWA2_Rokubacteria_73_35_curated
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Fis family transcriptional regulator
13_1_20cm_4_scaffold_456_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3510..5738)
DNA (2229bp) protein (743aa)
ntrY; nitrogen regulation sensor histidine kinase NtrY, HAMP and PAS domain-containing; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] Tax=RIF
nitrogen regulation protein NtrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] id=14625170 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
multi-sensor signal transduction histidine kinase
13_1_20cm_4_scaffold_456_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5738..6304)
DNA (567bp) protein (189aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2287876 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_456_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6352..7167)
DNA (816bp) protein (272aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=GWA2_Rokubacteria_73_35_curated
lpxC; UDP-3-O-acyl N-acetylglucosamine deacetylase (EC:3.5.1.-)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=2287875 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium HF0770_27F21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_456_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7845..8654)
DNA (810bp) protein (270aa)
hypothetical protein; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosomal RNA small subunit methyltransferase E id=2287874 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_456_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8629..9525)
DNA (897bp) protein (299aa)
prmA; 50S ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Ribosomal protein L11 methyltransferase id=2287873 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
50S ribosomal protein L11 methyltransferase
13_1_20cm_4_scaffold_456_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9530..10627)
DNA (1098bp) protein (366aa)
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Chaperone protein DnaJ id=2287872 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK
13_1_20cm_4_scaffold_456_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10632..11144)
DNA (513bp) protein (171aa)
GrpE protein HSP-70 cofactor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein GrpE id=2287871 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heat shock protein GrpE
13_1_20cm_4_scaffold_456_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11211..12239)
DNA (1029bp) protein (343aa)
heat-inducible transcriptional repressor; K03705 heat-inducible transcriptional repressor Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Heat-inducible transcription repressor HrcA id=2287870 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
heat-inducible transcriptional repressor
13_1_20cm_4_scaffold_456_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12249..13496)
DNA (1248bp) protein (416aa)
oxygen-independent coproporphyrinogen III oxidase (yggW) (EC:1.3.99.22) Tax=GWA2_Rokubacteria_73_35_curated
Oxygen-independent coproporphyrinogen III oxidase id=4648600 bin=GWF2_Methylomirabilis_70_14 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
coproporphyrinogen III oxidase
13_1_20cm_4_scaffold_456_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(13589..14296)
DNA (708bp) protein (236aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
signal peptidase I (EC:3.4.21.89)
Signal peptidase I id=3102374 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_456_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14299..16089)
DNA (1791bp) protein (597aa)
GTP-binding protein LepA; K03596 GTP-binding protein LepA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Elongation factor 4 id=3972895 bin=GWC2_Methylomirabilis_70_24 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
GTP-binding protein LepA
13_1_20cm_4_scaffold_456_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16146..17231)
DNA (1086bp) protein (362aa)
nucleotidyl transferase; K00966 mannose-1-phosphate guanylyltransferase [EC:2.7.7.13] Tax=GWA2_Rokubacteria_73_35_curated
Nucleotidyl transferase id=3102370 bin=GWC2_Methylomirabilis_70_16 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
nucleotidyl transferase
13_1_20cm_4_scaffold_456_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(17231..17401)
DNA (171bp) protein (57aa)
hypothetical protein; K09791 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein id=2287863 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_456_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17398..18393)
DNA (996bp) protein (332aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2] Tax=GWA2_Rokubacteria_73_35_curated
galE; UDP-glucose 4-epimerase (EC:5.1.3.2)
NAD-dependent epimerase/dehydratase id=2287861 bin=GWA2_Methylomirabilis_73_35 species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_456_19
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(18390..19325)
DNA (936bp) protein (312aa)
NAD-dependent epimerase/dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
UDP-glucuronate decarboxylase (EC:4.1.1.35)
NAD-dependent epimerase/dehydratase id=2287859 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_456_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19334..20317)
DNA (984bp) protein (328aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase id=2287856 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_456_21
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(20527..21348)
DNA (822bp) protein (274aa)
ctaG; putative CtaG protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative CtaG protein id=4464468 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
Cytochrome c oxidase caa3-type, assembly factor CtaG-related protein
13_1_20cm_4_scaffold_456_22
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(21449..21748)
DNA (300bp) protein (100aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative uncharacterized protein id=4464469 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome C oxidase subunit IV
13_1_20cm_4_scaffold_456_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21760..24168)
DNA (2409bp) protein (803aa)
ctaD; cytochrome c oxidase subunit I (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ctaD; cytochrome c oxidase subunit 1 (EC:1.9.3.1)
Cytochrome c oxidase, subunit I id=4464470 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_456_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24189..25166)
DNA (978bp) protein (326aa)
cytochrome c oxidase subunit II (EC:1.9.3.1); K02275 cytochrome c oxidase subunit II [EC:1.9.3.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
cytochrome c oxidase subunit II (EC:1.9.3.1)
Cytochrome c oxidase subunit 2 id=4464471 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_456_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(25242..26480)
DNA (1239bp) protein (413aa)
hydantoinase/carbamoylase amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hydantoinase/carbamoylase amidase (EC:3.5.1.87)
Amidase, hydantoinase/carbamoylase family id=4464472 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_456_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

26574..26990
DNA (417bp) protein (139aa)
acyl-CoA dehydrogenase Tax=GWA2_Rokubacteria_73_35_curated
Acyl-CoA dehydrogenase domain protein id=4464473 bin=GWA2_Methylomirabilis_73_35 species=Patulibacter medicamentivorans genus=Patulibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase
Displaying 26 items

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