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13_1_20cm_4_scaffold_488

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_488_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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2..229
DNA (228bp) protein (76aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=GWA2_Rokubacteria_73_35_curated
D-3-phosphoglycerate dehydrogenase (PGDH) (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase id=4213632 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_488_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

239..1027
DNA (789bp) protein (263aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=4213630 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_488_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1024..1740
DNA (717bp) protein (239aa)
putative regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
TIGR00370 family protein id=4213628 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative regulatory protein
13_1_20cm_4_scaffold_488_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1737..2672
DNA (936bp) protein (312aa)
urea amidolyase-like protein (EC:6.3.4.6)
putative regulatory protein Tax=GWA2_Rokubacteria_73_35_curated
Allophanate hydrolase subunit 2 id=4669076 bin=GWF2_Methylomirabilis_70_14 species=Clostridium sp. MSTE9 genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_488_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2669..3871
DNA (1203bp) protein (401aa)
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
class III aminotransferase; K01845 glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] id=14628094 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
class III aminotransferase
13_1_20cm_4_scaffold_488_6
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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3884..4669
DNA (786bp) protein (262aa)
Lactam utilization-like protein (lamB); K07160 UPF0271 protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Lactam utilization-like protein (lamB); K07160 UPF0271 protein id=14628095 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
Lactam utilization-like protein (lamB)
13_1_20cm_4_scaffold_488_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4711..5130
DNA (420bp) protein (140aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Uncharacterized protein id=4543822 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_488_8
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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5360..6013
DNA (654bp) protein (218aa)
alpha/beta hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
alpha/beta hydrolase id=14626075 bin=bin7_NC10_sister species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
alpha/beta hydrolase
13_1_20cm_4_scaffold_488_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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5980..7161
DNA (1182bp) protein (394aa)
gcvT; glycine cleavage system aminomethyltransferase T; K00605 aminomethyltransferase [EC:2.1.2.10] Tax=GWA2_Rokubacteria_73_35_curated
gcvT; glycine cleavage system T-protein (aminomethyltransferase) (EC:2.1.2.10)
Aminomethyltransferase id=4193474 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_488_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7164..7556
DNA (393bp) protein (131aa)
glycine cleavage system protein H; K02437 glycine cleavage system H protein Tax=GWA2_Rokubacteria_73_35_curated
glycine cleavage system protein H id=4193475 bin=GWA2_Methylomirabilis_73_35 species=Bacillus sp. m3-13 genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycine cleavage system H protein
13_1_20cm_4_scaffold_488_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

7556..8905
DNA (1350bp) protein (450aa)
gcvPA; GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] Tax=GWA2_Rokubacteria_73_35_curated
protein GcvPA; K00282 glycine dehydrogenase subunit 1 [EC:1.4.4.2] id=14628076 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
glycine dehydrogenase (decarboxylating) subunit 1 (EC:1.4.4.2)
13_1_20cm_4_scaffold_488_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

8905..10371
DNA (1467bp) protein (489aa)
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
glycine dehydrogenase subunit 2 (EC:1.4.4.2); K00283 glycine dehydrogenase subunit 2 [EC:1.4.4.2] id=14628075 bin=bin7_NC10_sister species=Geobacillus sp. GHH01 genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
13_1_20cm_4_scaffold_488_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10350..11174
DNA (825bp) protein (275aa)
lipoate protein ligase; K03800 lipoate-protein ligase A [EC:2.7.7.63] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Octanoyltransferase LipM id=5020377 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
biotin/lipoate A/B protein ligase
13_1_20cm_4_scaffold_488_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11171..11611
DNA (441bp) protein (147aa)
NUDIX family hydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NUDIX family hydrolase id=5020378 bin=GWA2_Methylomirabilis_73_35 species=Thermoproteus tenax genus=Thermoproteus taxon_order=Thermoproteales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphohydrolase
13_1_20cm_4_scaffold_488_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11608..13077
DNA (1470bp) protein (490aa)
cytosol aminopeptidase (LAP) (Leucyl aminopeptidase) PepA (EC:3.4.11.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
leucyl aminopeptidase (EC:3.4.11.1)
Probable cytosol aminopeptidase id=5020379 bin=GWA2_Methylomirabilis_73_35 species=ACD20 genus=ACD20 taxon_order=ACD20 taxon_class=ACD20 phylum=Melainabacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_488_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13077..13943
DNA (867bp) protein (289aa)
PHP domain-containing protein; K07053 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PHP domain protein id=5020380 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
PHP domain-containing protein
13_1_20cm_4_scaffold_488_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13959..14336
DNA (378bp) protein (126aa)
ArsC family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ArsC family protein id=5020381 bin=GWA2_Methylomirabilis_73_35 species=Gemmatimonas aurantiaca genus=Gemmatimonas taxon_order=Gemmatimonadales taxon_class=Gemmatimonadetes phylum=Gemmatimonadetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ArsC family protein
13_1_20cm_4_scaffold_488_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

14598..15437
DNA (840bp) protein (280aa)
dienelactone hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45] Tax=CSP1_6_Rokubacteria
dienelactone hydrolase; K01061 carboxymethylenebutenolidase [EC:3.1.1.45] id=14626572 bin=bin7_NC10_sister species=Azorhizobium caulinodans genus=Azorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
carboxymethylenebutenolidase
13_1_20cm_4_scaffold_488_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15440..16735)
DNA (1296bp) protein (432aa)
major facilitator transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Major facilitator superfamily MFS_1 id=5020383 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily MFS_1
13_1_20cm_4_scaffold_488_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16754..17680)
DNA (927bp) protein (309aa)
Thioesterase superfamily protein Tax=GWA2_Rokubacteria_73_35_curated
Thioesterase superfamily protein id=5020384 bin=GWA2_Methylomirabilis_73_35 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_488_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17694..18743
DNA (1050bp) protein (350aa)
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member Tax=GWA2_Rokubacteria_70_23_curated
Putative transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member id=4165967 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transport protein, belonging to the Major Facilitator Superfamily, of which narK is a member
13_1_20cm_4_scaffold_488_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18782..18925
DNA (144bp) protein (48aa)
hypothetical protein; K08999 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Displaying 22 items

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