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13_1_20cm_4_scaffold_849

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_4_scaffold_849_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2..1585
DNA (1584bp) protein (528aa)
dihydroxyacid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dihydroxyacid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase id=3261970 bin=GWA2_Methylomirabilis_73_35 species=uncultured bacterium CSLF43 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_849_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1595..2497)
DNA (903bp) protein (301aa)
3-hydroxyisobutyrate dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-hydroxyisobutyrate dehydrogenase id=3261976 bin=GWA2_Methylomirabilis_73_35 species=Rhipicephalus pulchellus genus=Rhipicephalus taxon_order=Ixodida taxon_class=Arachnida phylum=Arthropoda tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
3-hydroxyisobutyrate dehydrogenase
13_1_20cm_4_scaffold_849_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2544..3512
DNA (969bp) protein (323aa)
membrane protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Membrane protein, putative id=3660581 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_20cm_4_scaffold_849_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3676..4680)
DNA (1005bp) protein (335aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3560948 bin=GWC2_Methylomirabilis_70_24 species=Natrialba asiatica genus=Natrialba taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_20cm_4_scaffold_849_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4867..5154)
DNA (288bp) protein (96aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
selenoprotein
Uncharacterized protein id=3814678 bin=GWA2_Methylomirabilis_73_35 species=Modestobacter marinus genus=Modestobacter taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_849_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5151..5369)
DNA (219bp) protein (73aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=3814680 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_849_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5388..6827
DNA (1440bp) protein (480aa)
carbohydrate kinase FGGY; K00851 gluconokinase [EC:2.7.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
carbohydrate kinase; K00851 gluconokinase [EC:2.7.1.12] id=14627818 bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
carbohydrate kinase
13_1_20cm_4_scaffold_849_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6838..7593
DNA (756bp) protein (252aa)
pgl; 6-phosphogluconolactonase (EC:3.1.1.31) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pgl; 6-phosphogluconolactonase (EC:3.1.1.31)
6-phosphogluconolactonase (6PGL) id=3814683 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_1_20cm_4_scaffold_849_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7599..9089
DNA (1491bp) protein (497aa)
glucose-6-phosphate 1-dehydrogenase; K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
zwf; glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49); K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49] id=14625649 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
13_1_20cm_4_scaffold_849_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9113..9526)
DNA (414bp) protein (138aa)
putative lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3660574 bin=GWC2_Methylomirabilis_70_16 species=Desulfobacter postgatei genus=Desulfobacter taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_20cm_4_scaffold_849_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9579..11162)
DNA (1584bp) protein (528aa)
D-3-phosphoglycerate dehydrogenase; K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
D-3-phosphoglycerate dehydrogenase id=3870380 bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-phosphoglycerate dehydrogenase
13_1_20cm_4_scaffold_849_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11166..11924)
DNA (759bp) protein (253aa)
kduD; 2-deoxy-D-gluconate 3-dehydrogenase; K00065 2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative 2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase) id=3713938 bin=GWC2_Methylomirabilis_70_16 species=Afipia broomeae genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
kduD; 2-deoxy-D-gluconate 3-dehydrogenase
13_1_20cm_4_scaffold_849_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(12151..12648)
DNA (498bp) protein (166aa)
Pyridoxamine 5'-phosphate oxidase-related FMN-binding protein n=1 Tax=Micromonospora sp. (strain L5) RepID=E8S2S6_MICSL
pyridoxamine 5'-phosphate oxidase-related fmn-binding protein Tax=GWA2_Rokubacteria_70_23_curated
pyridoxamine 5'-phosphate oxidase-related fmn-binding protein
13_1_20cm_4_scaffold_849_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12709..13161)
DNA (453bp) protein (151aa)
dioxygenase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Ring-cleavage extradiol dioxygenase id=2050726 bin=GWD2_Deltaproteobacteria_55_8 species=Mycobacterium fortuitum genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
13_1_20cm_4_scaffold_849_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(13233..13988)
DNA (756bp) protein (252aa)
putative oxidoreductase Tax=GWC2_Rokubacteria_70_16_curated
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases id=2655987 bin=GWC2_Methylomirabilis_70_16 species=uncultured Chloroflexi bacterium HF0200_06I16 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
luciferase-like monooxygenase
13_1_20cm_4_scaffold_849_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14146..17325)
DNA (3180bp) protein (1060aa)
dnaE1; DNA polymerase III, alpha subunit (EC:2.7.7.7); K14162 error-prone DNA polymerase [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA polymerase III, alpha subunit n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NT41_GRAMM
DNA polymerase III subunit alpha
13_1_20cm_4_scaffold_849_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17342..17554)
DNA (213bp) protein (71aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=4472641 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA repair nucleotidyltransferase/DNA polymerase-like protein
13_1_20cm_4_scaffold_849_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17598..18704)
DNA (1107bp) protein (369aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=4472641 bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_20cm_4_scaffold_849_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18701..19258)
DNA (558bp) protein (186aa)
recombinase A Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RecA domain protein id=4472640 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Solibacter usitatus genus=Candidatus Solibacter taxon_order=Solibacterales taxon_class=Solibacteres phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
recombinase A
13_1_20cm_4_scaffold_849_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19378..20145
DNA (768bp) protein (256aa)
3-hydroxyacyl-CoA dehydrogenase type II (EC:1.1.1.35)
hsd17b10, abad, camr, erab, hadh2, hcd2, hsd10, mhbd, mrpp2, mrx17, mrx31, mrxs10, schad, sdr5c1; hydroxysteroid (17-beta) dehydrogenase 10; K08683 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methyl
putative short chain dehydrogenase id=4472638 bin=GWA2_Methylomirabilis_73_35 species=Pseudonocardia sp. P1 genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_849_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20157..20822
DNA (666bp) protein (222aa)
spermidine synthase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Spermidine synthase id=4472637 bin=GWA2_Methylomirabilis_73_35 species=Gallaecimonas xiamenensis genus=Gallaecimonas taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_849_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(20809..21888)
DNA (1080bp) protein (360aa)
ABC transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC transporter related protein id=4478788 bin=GWF2_Methylomirabilis_70_14 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heme ABC transporter ATP-binding protein
13_1_20cm_4_scaffold_849_23
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22350..22805)
DNA (456bp) protein (152aa)
CoA-binding domain-containing protein; K06929 Tax=GWA2_Rokubacteria_73_35_curated
CoA-binding domain protein id=4472625 bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CoA-binding domain-containing protein
13_1_20cm_4_scaffold_849_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22820..23899)
DNA (1080bp) protein (360aa)
3'-5' exonuclease; K03684 ribonuclease D [EC:3.1.13.5] Tax=GWA2_Rokubacteria_73_35_curated
3'-5' exonuclease id=4472621 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
3'-5' exonuclease
13_1_20cm_4_scaffold_849_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(24039..24623)
DNA (585bp) protein (195aa)
short-chain dehydrogenase/reductase SDR Tax=GWA2_Rokubacteria_73_35_curated
Short-chain dehydrogenase/reductase SDR id=4472514 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_20cm_4_scaffold_849_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25011..25442
DNA (432bp) protein (144aa)
endoribonuclease L-PSP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Endoribonuclease L-PSP id=4472509 bin=GWA2_Methylomirabilis_73_35 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation inhibitor
13_1_20cm_4_scaffold_849_27
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

25645..26535
DNA (891bp) protein (297aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
6-phosphogluconate dehydrogenase Tax=GWA2_Rokubacteria_70_23_curated
2-hydroxy-3-oxopropionate reductase id=4918773 bin=GWC2_Methylomirabilis_70_24 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
13_1_20cm_4_scaffold_849_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(26542..27123)
DNA (582bp) protein (194aa)
Predicted protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Predicted protein id=4472501 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Micromonas taxon_order=Mamiellales taxon_class=Mamiellophyceae phylum=Chlorophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_20cm_4_scaffold_849_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(27125..28216)
DNA (1092bp) protein (364aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4472500 bin=GWA2_Methylomirabilis_73_35 species=Synergistes sp. 3_1_syn1 genus=Synergistes taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Displaying 29 items

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