ggKbase home page

13_1_20cm_2_scaffold_6619

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_20cm_2_scaffold_6619_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2..229)
DNA (228bp) protein (76aa)
universal stress protein UspA-like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_20cm_2_scaffold_6619_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(357..1319)
DNA (963bp) protein (321aa)
methylated-DNA--protein-cysteine methyltransferase; K00567 methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Methylated-DNA--protein-cysteine methyltransferase n=1 Tax=uncultured Chloroflexi bacterium RepID=H5SLB0_9CHLR alias=RBG9_7_123,RBG9_C00007G00123 id=1244663 tax=RBG9 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi
methylated-DNA--protein-cysteine methyltransferase
13_1_20cm_2_scaffold_6619_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1316..1843)
DNA (528bp) protein (176aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C6H5_SPHTD
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ECF subfamily RNA polymerase sigma-24 subunit
13_1_20cm_2_scaffold_6619_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1868..2971)
DNA (1104bp) protein (368aa)
Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0ACR0_ALKEH
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_20cm_2_scaffold_6619_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2987..4021)
DNA (1035bp) protein (345aa)
Hypothetical conserved protein n=1 Tax=uncultured planctomycete RepID=H5SC15_9BACT
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_20cm_2_scaffold_6619_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(4108..5004)
DNA (897bp) protein (299aa)
Putative uncharacterized protein n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LHW5_SYNFM
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_20cm_2_scaffold_6619_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5001..5558)
DNA (558bp) protein (186aa)
ECF-family RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FFY4_SORC5
ECF family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ECF family RNA polymerase sigma factor
13_1_20cm_2_scaffold_6619_8
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5903..6673)
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI00036BA46E
Uncharacterized protein {ECO:0000313|EMBL:ETW93960.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
hypothetical protein
13_1_20cm_2_scaffold_6619_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6707..7369
DNA (663bp) protein (221aa)
TENA/THI-4 family; K03707 thiaminase (transcriptional activator TenA) [EC:3.5.99.2] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
TENA/THI-4 family n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9KYJ3_THERP
TENA/THI-4 family
13_1_20cm_2_scaffold_6619_10
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

7366..8070
DNA (705bp) protein (235aa)
Putative hydrolase n=1 Tax=Phycisphaera mikurensis (strain NBRC 102666 / KCTC 22515 / FYK2301M01) RepID=I0IIV1_PHYMF
hypothetical protein; K07025 putative hydrolase of the HAD superfamily Tax=GWC2_Rokubacteria_70_16_curated
putative hydrolase
13_1_20cm_2_scaffold_6619_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8338..9444
DNA (1107bp) protein (369aa)
Outer membrane protein and related peptidoglycan-associated (Lipo)proteins-like protein n=1 Tax=Chlorobium chlorochromatii (strain CaD3) RepID=Q3ARS4_CHLCH
OmpA/MotB protein; K03640 peptidoglycan-associated lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
peptidoglycan-associated (lipo)protein-like protein
13_1_20cm_2_scaffold_6619_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(9601..10050)
DNA (450bp) protein (150aa)
id=14625257 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_20cm_2_scaffold_6619_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10111..10848
DNA (738bp) protein (246aa)
enoyl-CoA hydratase n=1 Tax=Sandarakinorhabdus limnophila RepID=UPI0003B4EE9D
paaG; enoyl-CoA hydratase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
paaG; enoyl-CoA hydratase
13_1_20cm_2_scaffold_6619_14
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11364..11804)
DNA (441bp) protein (147aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UN23_METS4
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACA20385.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacter
two component LuxR family transcriptional regulator
13_1_20cm_2_scaffold_6619_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(11907..13043)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036E1826 rbh
mandelate racemase/muconate lactonizing protein Tax=GWA2_Rokubacteria_73_35_curated
mandelate racemase/muconate lactonizing protein
Displaying 15 items

View Taxonomy