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13_1_40cm_2_scaffold_20233

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_20233_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1..678)
DNA (678bp) protein (226aa)
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dihydrolipoyl dehydrogenase id=4930064 bin=GWA2_Methylomirabilis_73_35 species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate dehydrogenase E3 component
13_1_40cm_2_scaffold_20233_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(806..1108)
DNA (303bp) protein (101aa)
dihydrolipoyllysine-residue acetyltransferase (EC:2.3.1.12); K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=GWA2_Rokubacteria_70_23_curated
Dihydrolipoyllysine-residue acetyltransferase id=3287735 bin=GWF2_Methylomirabilis_70_14 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dehydrogenase catalytic domain-containing protein
13_1_40cm_2_scaffold_20233_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(1075..2091)
DNA (1017bp) protein (339aa)
dehydrogenase catalytic domain-containing protein; K00627 pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dihydrolipoyllysine-residue acetyltransferase (EC:2.3.1.12)
Putative Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex id=4930066 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_20233_4
RBG_16_NC10_65_8_curated, NC10, Bacteria

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comp(2088..2402)
DNA (315bp) protein (105aa)
Tax=RBG_16_NC10_65_8_curated
13_1_40cm_2_scaffold_20233_5
unknown

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2489..2656
DNA (168bp) protein (56aa)

This feature has no annotations

13_1_40cm_2_scaffold_20233_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(2945..3289)
DNA (345bp) protein (115aa)
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] id=14625978 bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=CSP1_6_Rokubacteria
transketolase, central region
13_1_40cm_2_scaffold_20233_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(3310..3876)
DNA (567bp) protein (189aa)
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] id=14625978 bin=bin7_NC10_sister species=Desulfococcus multivorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
transketolase, central region; K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=CSP1_6_Rokubacteria
transketolase, central region
13_1_40cm_2_scaffold_20233_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(3864..5009)
DNA (1146bp) protein (382aa)
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] id=14625979 bin=bin7_NC10_sister species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=CSP1_6_Rokubacteria
pyruvate dehydrogenase
13_1_40cm_2_scaffold_20233_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(5076..5876)
DNA (801bp) protein (267aa)
enoyl-CoA hydratase; K01692 enoyl-CoA hydratase [EC:4.2.1.17] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q120A0_POLSJ
13_1_40cm_2_scaffold_20233_10
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6031..6780)
DNA (750bp) protein (250aa)
3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TRS7_9PROT
3-oxoacyl-(Acyl-carrier protein) reductase {ECO:0000313|EMBL:EDP64611.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
13_1_40cm_2_scaffold_20233_11
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7041..7442)
DNA (402bp) protein (134aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteracea
13_1_40cm_2_scaffold_20233_12
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(7445..8323)
DNA (879bp) protein (293aa)
Ku family containing protein; K10979 DNA end-binding protein Ku id=14626955 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Ku family containing protein; K10979 DNA end-binding protein Ku Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Ku family containing protein
13_1_40cm_2_scaffold_20233_13
unknown

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comp(9114..9539)
DNA (426bp) protein (142aa)

This feature has no annotations

13_1_40cm_2_scaffold_20233_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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10001..10333
DNA (333bp) protein (111aa)
DNA ligase D; K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=GWA2_Rokubacteria_73_35_curated
DNA ligase D id=4930074 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA ligase D
13_1_40cm_2_scaffold_20233_15
unknown

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10330..10497
DNA (168bp) protein (56aa)

This feature has no annotations

Displaying 15 items

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