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13_1_40cm_2_scaffold_2055

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2055_1
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(30..188)
DNA (159bp) protein (53aa)
Uncharacterized protein {ECO:0000313|EMBL:EYS86807.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-
13_1_40cm_2_scaffold_2055_2
unknown

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comp(169..333)
DNA (165bp) protein (55aa)

This feature has no annotations

13_1_40cm_2_scaffold_2055_3
BJP_IG2102_Gammaproteobacteria_62_140, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(336..1865)
DNA (1530bp) protein (510aa)
Peptidase S41 n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QRF5_RALPI
peptidase S41
Tax=BJP_IG2102_Gammaproteobacteria_62_140
13_1_40cm_2_scaffold_2055_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1862..3253)
DNA (1392bp) protein (464aa)
fixN; cytochrome-c oxidase fixN chain (EC:1.9.3.1)
Cytochrome-c oxidase FixN chain {ECO:0000313|EMBL:CCE99720.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CCE99720.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiacea
Cytochrome-c oxidase fixN chain n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AF88_RHIFH
13_1_40cm_2_scaffold_2055_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(3290..4132)
DNA (843bp) protein (281aa)
endopeptidase htpX (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] id=14625131 bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
endopeptidase htpX (EC:3.4.24.-); K03799 heat shock protein HtpX [EC:3.4.24.-] Tax=CSP1_6_Rokubacteria
endopeptidase htpX (EC:3.4.24.-)
13_1_40cm_2_scaffold_2055_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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4789..4971
DNA (183bp) protein (61aa)
rpmF; 50S ribosomal protein L32 RpmF Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
50S ribosomal protein L32 id=4343491 bin=GWA2_Methylomirabilis_73_35 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_2055_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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5011..6033
DNA (1023bp) protein (341aa)
putative glycerol-3-phosphate acyltransferase PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Phosphate acyltransferase id=2638116 bin=GWF2_Methylomirabilis_70_14 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative glycerol-3-phosphate acyltransferase PlsX
13_1_40cm_2_scaffold_2055_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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6030..7010
DNA (981bp) protein (327aa)
FabH; 3-oxoacyl-(acyl-carrier-protein) synthase III; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
FabH; 3-oxoacyl-(acyl-carrier-protein) synthase III; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] id=14625127 bin=bin7_NC10_sister species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
FabH; 3-oxoacyl-(acyl-carrier-protein) synthase III
13_1_40cm_2_scaffold_2055_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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7036..7971
DNA (936bp) protein (312aa)
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
malonyl CoA-acyl carrier protein transacylase; K00645 [acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39] id=14625126 bin=bin7_NC10_sister species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
malonyl CoA-acyl carrier protein transacylase
13_1_40cm_2_scaffold_2055_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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7968..8717
DNA (750bp) protein (250aa)
3-oxoacyl-(acyl-carrier-protein) reductase; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-oxoacyl-(Acyl-carrier-protein) reductase FabG id=2547036 bin=GWC2_Methylomirabilis_70_16 species=Paenibacillus alvei genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
fabG-2; 3-oxoacyl-ACP reductase
13_1_40cm_2_scaffold_2055_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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8765..9001
DNA (237bp) protein (79aa)
acpP; acyl carrier protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
acpP; acyl carrier protein; K02078 acyl carrier protein id=14625124 bin=bin7_NC10_sister species=Desulfurobacterium sp. TC5-1 genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=bin7_NC10_sister organism_group=NC10
acpP; acyl carrier protein
13_1_40cm_2_scaffold_2055_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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9004..10272
DNA (1269bp) protein (423aa)
fabF; 3-oxoacyl-(acyl-carrier-protein) synthase 2; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=2638134 bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_2055_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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10281..10724
DNA (444bp) protein (148aa)
rnc; ribonuclease 3; K03685 ribonuclease III [EC:3.1.26.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribonuclease 3 id=3897273 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ribonuclease III
13_1_40cm_2_scaffold_2055_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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10734..11879
DNA (1146bp) protein (382aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein id=14625121 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_2055_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(11905..13140)
DNA (1236bp) protein (412aa)
Major facilitator superfamily MFS_1 Tax=GWA2_Rokubacteria_70_23_curated
Major facilitator superfamily MFS_1 id=14627704 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Major facilitator superfamily MFS_1
13_1_40cm_2_scaffold_2055_16
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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13214..14173
DNA (960bp) protein (320aa)
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] id=14625120 bin=bin7_NC10_sister species=Parvibaculum lavamentivorans genus=Parvibaculum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] Tax=CSP1_6_Rokubacteria
glutamate--ammonia ligase
13_1_40cm_2_scaffold_2055_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

14223..14543
DNA (321bp) protein (107aa)
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] Tax=CSP1_6_Rokubacteria
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] id=14625120 bin=bin7_NC10_sister species=Parvibaculum lavamentivorans genus=Parvibaculum taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
glutamate--ammonia ligase
13_1_40cm_2_scaffold_2055_18
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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14628..15392
DNA (765bp) protein (255aa)
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase (EC:1.1.1.-) id=14625119 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
short-chain dehydrogenase/reductase SDR Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
short-chain dehydrogenase/reductase SDR
13_1_40cm_2_scaffold_2055_19
RBG_13_Deltaproteobacteria_49_15_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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15410..17086
DNA (1677bp) protein (559aa)
ABC transporter permease n=1 Tax=Paenibacillus elgii RepID=UPI000248DC31
binding-protein-dependent transporter inner membrane component; K02011 iron(III) transport system permease protein Tax=RBG_13_Deltaproteobacteria_49_15_curated
binding-protein-dependent transport system inner membrane protein
13_1_40cm_2_scaffold_2055_20
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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17105..18070
DNA (966bp) protein (322aa)
Extracellular solute-binding protein family 1 n=1 Tax=Desulfurispirillum indicum (strain ATCC BAA-1389 / S5) RepID=E6W3D0_DESIS
family 1 extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein Tax=RBG_16_Deltaproteobacteria_49_23_curated
family 1 extracellular solute-binding protein
Displaying 20 items

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