ggKbase home page

13_1_40cm_2_scaffold_23148

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_23148_1
RBG_16_Deltaproteobacteria_50_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1135)
DNA (1134bp) protein (378aa)
Lipopolysaccharide biosynthesis protein n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G4P0_GEOUR
gumC1; lipopolysaccharide biosynthesis protein Tax=RBG_16_Deltaproteobacteria_50_11_curated
lipopolysaccharide biosynthesis protein
13_1_40cm_2_scaffold_23148_2
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(1148..1882)
DNA (735bp) protein (245aa)
periplasmic protein involved in polysaccharide export Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
Putative Polysaccharide export protein id=4972193 bin=GWA2_OP3_52_12 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
putative polysaccharide export protein
13_1_40cm_2_scaffold_23148_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1906..3315)
DNA (1410bp) protein (470aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=4781397 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two component sigma54 specific Fis family transcriptional regulator Tax=GWC2_Rokubacteria_70_16_curated
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_2_scaffold_23148_4
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3455..4834)
DNA (1380bp) protein (460aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX09174.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
Sugar transferase, PEP-CTERM system associated id=2302436 bin=GWB2_Desulfobacterales_56_26 species=Desulfobulbus propionicus genus=Desulfobulbus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Desulfobacterales_56_26 organism_group=Deltaproteobacteria organism_desc=Good
sugar transferase
13_1_40cm_2_scaffold_23148_5
Pelobacter propionicus, Pelobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5067..6290)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARV6_PELPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABL00077.1}; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propio
13_1_40cm_2_scaffold_23148_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(6372..6728)
DNA (357bp) protein (119aa)
signal transduction histidine kinase id=14627691 bin=bin7_NC10_sister species=Desulfovibrio longus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
signal transduction histidine kinase Tax=CSP1_6_Rokubacteria
Fis family two component sigma-54 specific transcriptional regulator
13_1_40cm_2_scaffold_23148_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6850..7359
DNA (510bp) protein (170aa)
two component, sigma54 specific, Fis family transcriptional regulator id=14627680 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
two component, sigma54 specific, Fis family transcriptional regulator Tax=CSP1_6_Rokubacteria
actB; Fis family transcriptional regulator
13_1_40cm_2_scaffold_23148_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7413..7898
DNA (486bp) protein (162aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=2838021 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
two component sigma-54 specific Fis family transcriptional regulator Tax=GWA2_Rokubacteria_70_23_curated
two component sigma54 specific Fis family transcriptional regulator
13_1_40cm_2_scaffold_23148_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8140..8619
DNA (480bp) protein (160aa)
putative twin-arginine translocation protein TatB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sec-independent protein translocase protein TatA id=1884921 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. RS9917 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative twin-arginine translocation protein TatB
13_1_40cm_2_scaffold_23148_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8695..9336
DNA (642bp) protein (214aa)
lexA; LexA repressor (EC:3.4.21.88)
LexA repressor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LexA repressor id=1884925 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_23148_11
unknown

Not on your lists

9364..9558
DNA (195bp) protein (65aa)

This feature has no annotations

13_1_40cm_2_scaffold_23148_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9569..10126)
DNA (558bp) protein (186aa)
metal dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Metal dependent phosphohydrolase id=1884935 bin=GWA2_Methylomirabilis_73_35 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
Displaying 12 items

View Taxonomy