ggKbase home page

13_1_40cm_2_scaffold_2782

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_2782_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..524)
DNA (522bp) protein (174aa)
Coenzyme A pyrophosphatase id=1890929 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
coenzyme A pyrophosphatase Tax=GWA2_Rokubacteria_73_35_curated
DNA mismatch repair protein MutT
13_1_40cm_2_scaffold_2782_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(535..1326)
DNA (792bp) protein (264aa)
Enoyl-CoA hydratase id=3526421 bin=GWC2_Methylomirabilis_70_16 species=marine actinobacterium PHSC20C1 genus=unknown taxon_order=unknown taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
enoyl-CoA hydratase Tax=GWC2_Rokubacteria_70_16_curated
enoyl-CoA hydratase
13_1_40cm_2_scaffold_2782_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1350..2132)
DNA (783bp) protein (261aa)
oxidoreductase (EC:1.-.-.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative oxidoreductase id=1890936 bin=GWA2_Methylomirabilis_73_35 species=Bordetella petrii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase family protein
13_1_40cm_2_scaffold_2782_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2132..2896)
DNA (765bp) protein (255aa)
2-oxopent-4-enoate hydratase (EC:4.2.1.80) Tax=GWA2_Rokubacteria_73_35_curated
2-oxopent-4-enoate hydratase (EC:4.2.1.80)
4-oxalocrotonate decarboxylase id=1890939 bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_2782_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(2907..3257)
DNA (351bp) protein (117aa)
id=4117858 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=4117858 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_2782_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(3285..4469)
DNA (1185bp) protein (395aa)
acaB-2; acetyl-CoA acetyltransferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Propanoyl-CoA C-acyltransferase id=1890943 bin=GWA2_Methylomirabilis_73_35 species=Mycobacterium rhodesiae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acaB-2; acetyl-CoA acetyltransferase
13_1_40cm_2_scaffold_2782_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4527..5321)
DNA (795bp) protein (265aa)
abortive infection protein; K07052 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Abortive infection protein id=1890947 bin=GWA2_Methylomirabilis_73_35 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
abortive infection protein
13_1_40cm_2_scaffold_2782_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5321..6967)
DNA (1647bp) protein (549aa)
cyclohexanecarboxylate-CoA ligase; K04116 cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-] Tax=GWC2_Rokubacteria_70_16_curated
AMP-dependent synthetase and ligase id=4748863 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cyclohexanecarboxylate-CoA ligase
13_1_40cm_2_scaffold_2782_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(6985..7779)
DNA (795bp) protein (265aa)
short-chain dehydrogenase/reductase SDR Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Short-chain dehydrogenase/reductase SDR id=3880340 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase/reductase SDR
13_1_40cm_2_scaffold_2782_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7776..9641)
DNA (1866bp) protein (622aa)
acyl-CoA dehydrogenase domain-containing protein; K04117 cyclohexanecarboxyl-CoA dehydrogenase [EC:1.3.99.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Acyl-CoA dehydrogenase domain protein id=4748892 bin=GWC2_Methylomirabilis_70_16 species=Alicyclobacillus acidocaldarius genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acyl-CoA dehydrogenase domain-containing protein
13_1_40cm_2_scaffold_2782_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9654..11015)
DNA (1362bp) protein (454aa)
MmgE/PrpD family protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein id=14627809 bin=bin7_NC10_sister species=Azoarcus toluclasticus genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_2782_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(11057..11917)
DNA (861bp) protein (287aa)
Putative uncharacterized protein id=3955123 bin=GWA2_Methylomirabilis_73_35 species=Meiothermus silvanus genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_2_scaffold_2782_13
unknown

Not on your lists

comp(11937..12332)
DNA (396bp) protein (132aa)

This feature has no annotations

13_1_40cm_2_scaffold_2782_trna_1
unknown

Not on your lists

comp(12371..12443)
DNA (73bp)
transferRNA
13_1_40cm_2_scaffold_2782_14
unknown

Not on your lists

13027..13236
DNA (210bp) protein (70aa)

This feature has no annotations

13_1_40cm_2_scaffold_2782_15
Corynebacterium aurimucosum, Corynebacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13638..14648)
DNA (1011bp) protein (337aa)
PREDICTED: calphotin-like n=1 Tax=Danio rerio RepID=UPI0003837F63
Fe-S oxidoreductase
Putative Fe-S oxidoreductase {ECO:0000313|EMBL:ACP33930.1}; TaxID=548476 species="Bacteria; Actinobacteria; Corynebacteriales; Corynebacteriaceae; Corynebacterium.;" source="Corynebacterium aurimucosu
13_1_40cm_2_scaffold_2782_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14799..15512)
DNA (714bp) protein (238aa)
Branched-chain amino acid ABC transporter,ATP-binding component (LivF-like) id=5022299 bin=GWA2_Methylomirabilis_73_35 species=Azospirillum brasilense genus=Azospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
branched-chain amino acid ABC transporter,ATP-binding component (LivF-like) Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_2782_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15509..15709)
DNA (201bp) protein (67aa)
Branched-chain amino acid ABC transporter ATP-binding protein id=5022300 bin=GWA2_Methylomirabilis_73_35 species=Haloferax denitrificans genus=Haloferax taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livG3; branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
livG1; putative branched-chain amino acids ABC transporter ATP-binding protein
13_1_40cm_2_scaffold_2782_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16211..17209)
DNA (999bp) protein (333aa)
Inner-membrane translocator id=5022301 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
branched-chain amino acid ABC transporter permease
13_1_40cm_2_scaffold_2782_19
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17226..18077)
DNA (852bp) protein (284aa)
Inner-membrane translocator id=5022302 bin=GWA2_Methylomirabilis_73_35 species=Thermus sp. CCB_US3_UF1 genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
inner-membrane translocator
Displaying 20 items

View Taxonomy