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13_1_40cm_2_scaffold_3352

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_2_scaffold_3352_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..843)
DNA (843bp) protein (281aa)
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8); K15916 glucose/mannose-6-phosphate isomerase [EC:5.3.1.9 5.3.1.8] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
bifunctional phosphoglucose/phosphomannose isomerase (EC:5.3.1.8)
Bifunctional phosphoglucose/phosphomannose isomerase id=3879951 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3352_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(804..2909)
DNA (2106bp) protein (702aa)
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase Tax=GWA2_Rokubacteria_73_35_curated
4-alpha-glucanotransferase id=3879949 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3352_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2917..3762)
DNA (846bp) protein (282aa)
UPF0042 nucleotide-binding protein DAMO_1192 id=3879946 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_3352_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3775..5238)
DNA (1464bp) protein (488aa)
RNA polymerase sigma-54 factor id=3879943 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RNA polymerase sigma 54 subunit RpoN; K03092 RNA polymerase sigma-54 factor Tax=GWA2_Rokubacteria_73_35_curated
RNA polymerase sigma54 factor
13_1_40cm_2_scaffold_3352_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5260..5982)
DNA (723bp) protein (241aa)
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily id=3879942 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lptB; lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily
13_1_40cm_2_scaffold_3352_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5986..6597)
DNA (612bp) protein (204aa)
lipopolysaccharide transport periplasmic protein LptA; K09774 lipopolysaccharide export system protein LptA Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Lipopolysaccharide transport periplasmic protein LptA id=4411420 bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
OstA-like protein
13_1_40cm_2_scaffold_3352_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6594..7148)
DNA (555bp) protein (185aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Hypothetical membrane protein id=3879938 bin=GWA2_Methylomirabilis_73_35 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_3352_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7223..8191)
DNA (969bp) protein (323aa)
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13) Tax=GWA2_Rokubacteria_73_35_curated
kpsF; arabinose 5-phosphate isomerase (EC:5.3.1.13)
Arabinose 5-phosphate isomerase id=3879936 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3352_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(8188..9036)
DNA (849bp) protein (283aa)
kdsA; 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-dehydro-3-deoxyphosphooctonate aldolase id=4527157 bin=GWF2_Methylomirabilis_70_14 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
2-dehydro-3-deoxyphosphooctonate aldolase
13_1_40cm_2_scaffold_3352_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9033..10634)
DNA (1602bp) protein (534aa)
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2) id=14625764 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyrG; CTP synthase (CTP synthetase) (EC:6.3.4.2)
13_1_40cm_2_scaffold_3352_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10639..12240)
DNA (1602bp) protein (534aa)
poly A polymerase; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein; K00974 tRNA nucleotidyltransferase (CCA-adding enzyme) [EC:2.7.7.72 3.1.3.- 3.1.4.-] id=14625765 bin=bin7_NC10_sister species=Aminomonas paucivorans genus=Aminomonas taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_2_scaffold_3352_12
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(12240..13169)
DNA (930bp) protein (310aa)
XerD; site-specific recombinase XerD; K04763 integrase/recombinase XerD id=14625766 bin=bin7_NC10_sister species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
XerD; site-specific recombinase XerD; K04763 integrase/recombinase XerD Tax=CSP1_6_Rokubacteria
tyrosine recombinase XerD
13_1_40cm_2_scaffold_3352_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13181..14329)
DNA (1149bp) protein (383aa)
integral membrane protein MviN; K03980 virulence factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integral membrane protein MviN id=2720726 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane protein MviN
13_1_40cm_2_scaffold_3352_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists


14777..15037
DNA (261bp) protein (87aa)
30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 id=14625768 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
rpsT; 30S ribosomal protein S20
13_1_40cm_2_scaffold_3352_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15040..16365)
DNA (1326bp) protein (442aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2720728 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_2_scaffold_3352_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16362..17381)
DNA (1020bp) protein (340aa)
holA; DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative DNA polymerase III, delta subunit id=2720729 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Eggerthella taxon_order=Coriobacteriales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_2_scaffold_3352_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(17386..17889)
DNA (504bp) protein (168aa)
Putative uncharacterized protein id=2720730 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_2_scaffold_3352_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists


comp(17886..20369)
DNA (2484bp) protein (828aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=14625772 bin=bin7_NC10_sister species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=CSP1_6_Rokubacteria
leuS; leucyl-tRNA ligase
13_1_40cm_2_scaffold_3352_19
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(20475..20738)
DNA (264bp) protein (88aa)
id=14625776 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
id=14625776 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_2_scaffold_3352_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(20782..22209)
DNA (1428bp) protein (476aa)
uvrC; excinuclease ABC subunit C; K03703 excinuclease ABC subunit C Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
UvrABC system protein C id=2720733 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
excinuclease ABC subunit C
Displaying 20 items

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