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13_2_20cm_scaffold_11493

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_11493_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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1..162
DNA (162bp) protein (54aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Signal peptidase I id=3102374 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
signal peptidase I
13_2_20cm_scaffold_11493_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

162..1376
DNA (1215bp) protein (405aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22); K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Oxygen-independent coproporphyrinogen III oxidase id=4648600 bin=GWF2_Methylomirabilis_70_14 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
coproporphyrinogen III oxidase
13_2_20cm_scaffold_11493_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1386..2414
DNA (1029bp) protein (343aa)
heat-inducible transcriptional repressor; K03705 heat-inducible transcriptional repressor Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Heat-inducible transcription repressor HrcA id=2287870 bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
heat-inducible transcriptional repressor
13_2_20cm_scaffold_11493_4
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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2481..2786
DNA (306bp) protein (102aa)
grpE; heat shock protein nucleotide exchange factor GrpE; K03687 molecular chaperone GrpE Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Protein GrpE id=2287871 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molecular chaperone GrpE
13_2_20cm_scaffold_11493_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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2783..2905
DNA (123bp) protein (41aa)
GrpE protein HSP-70 cofactor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_2_20cm_scaffold_11493_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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2910..3947
DNA (1038bp) protein (346aa)
dnaJ; chaperone protein dnaJ, heat shock protein (Hsp40), co-chaperone with dnaK Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Chaperone protein DnaJ id=2287872 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
molecular chaperone DnaJ
13_2_20cm_scaffold_11493_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3969..4799
DNA (831bp) protein (277aa)
prmA; 50S ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Ribosomal protein L11 methyltransferase id=2287873 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum acetoxidans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L11 methyltransferase
13_2_20cm_scaffold_11493_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4774..5583
DNA (810bp) protein (270aa)
hypothetical protein; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Ribosomal RNA small subunit methyltransferase E id=2287874 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_11493_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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5752..6174
DNA (423bp) protein (141aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=14625167 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_11493_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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6347..7165
DNA (819bp) protein (273aa)
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; K02535 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [EC:3.5.1.108] Tax=GWA2_Rokubacteria_73_35_curated
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase id=2287875 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium HF0770_27F21 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
13_2_20cm_scaffold_11493_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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7213..7779
DNA (567bp) protein (189aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=2287876 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_11493_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7779..10007
DNA (2229bp) protein (743aa)
ntrY; nitrogen regulation sensor histidine kinase NtrY, HAMP and PAS domain-containing; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] Tax=RIF
nitrogen regulation protein NtrY; K13598 two-component system, NtrC family, nitrogen regulation sensor histidine kinase NtrY [EC:2.7.13.3] id=14625170 bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase
13_2_20cm_scaffold_11493_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10011..11351
DNA (1341bp) protein (447aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=2085290 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Fis family transcriptional regulator; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=GWA2_Rokubacteria_73_35_curated
Fis family transcriptional regulator
13_2_20cm_scaffold_11493_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

11430..12200
DNA (771bp) protein (257aa)
xthA; exodeoxyribonuclease III (EC:3.1.11.2) Tax=GWC2_Rokubacteria_70_16_curated
Exodeoxyribonuclease III id=4792717 bin=GWC2_Methylomirabilis_70_16 species=Deinococcus peraridilitoris genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10 rbh
exodeoxyribonuclease III
13_2_20cm_scaffold_11493_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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12200..12658
DNA (459bp) protein (153aa)
hypothetical protein id=14626506 bin=bin7_NC10_sister species=Deinococcus sp. 2009 genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_2_20cm_scaffold_11493_16
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

12745..13308
DNA (564bp) protein (188aa)
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9); K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] Tax=RI
PyrR; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase (EC:2.4.2.9)
Bifunctional protein PyrR id=4792710 bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_11493_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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13311..14132
DNA (822bp) protein (274aa)
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2) id=14625173 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
pyrB; aspartate carbamoyltransferase (catalytic subunit) (EC:2.1.3.2)
Displaying 17 items

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