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13_2_20cm_scaffold_1205

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1205_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1095..1562
DNA (468bp) protein (156aa)
ABC-type dipeptide transport system, periplasmic component Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC-type dipeptide transport system, periplasmic component id=2654072 bin=GWC2_Methylomirabilis_70_24 species=Halobacteroides halobius genus=Halobacteroides taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
dipeptide ABC transporter substrate-binding protein
13_2_20cm_scaffold_1205_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1559..3460
DNA (1902bp) protein (634aa)
two component system sensor histidine kinase (EC:2.7.13.3)
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Two component system sensor histidine kinase id=3368252 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacula toluolica genus=Desulfobacula taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_1205_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3617..4495
DNA (879bp) protein (293aa)
putative hybrid sensor histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
putative hybrid sensor histidine kinase (EC:2.7.13.3)
Putative Hybrid sensor histidine kinase id=3368251 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_1205_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(4502..5452)
DNA (951bp) protein (317aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=14625214 bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
13_2_20cm_scaffold_1205_5
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(5449..6318)
DNA (870bp) protein (290aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein id=14625213 bin=bin7_NC10_sister species=Haloterrigena turkmenica genus=Haloterrigena taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=bin7_NC10_sister organism_group=NC10 rbh
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein Tax=CSP1_6_Rokubacteria
amino acid/amide ABC transporter membrane protein 1, HAAT family
13_2_20cm_scaffold_1205_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(6315..7028)
DNA (714bp) protein (238aa)
branched-chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family id=3772781 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
branched-chain amino acid ABC transporter ATP-binding protein
13_2_20cm_scaffold_1205_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(7028..7732)
DNA (705bp) protein (235aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
ABC transporter ATP-binding protein id=4960490 bin=GWC2_Methylomirabilis_70_24 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
ABC transporter
13_2_20cm_scaffold_1205_8
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(7822..9132)
DNA (1311bp) protein (437aa)
amino acid/amide ABC transporter substrate-binding protein, HAAT family id=14625210 bin=bin7_NC10_sister species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
amino acid/amide ABC transporter substrate-binding protein, HAAT family Tax=CSP1_6_Rokubacteria
extracellular ligand-binding receptor
13_2_20cm_scaffold_1205_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9235..10014)
DNA (780bp) protein (260aa)
short-chain reductase/dehydrogenase 3-oxoacyl-[acyl-carrier-protein] reductase (EC:1.1.1.100); K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacter
Putative short-chain reductase/dehydrogenase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z6G2_AZOL4 rbh
putative short-chain reductase/dehydrogenase
13_2_20cm_scaffold_1205_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(10030..10965)
DNA (936bp) protein (312aa)
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] id=14625209 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
dihydrodipicolinate synthase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] Tax=CSP1_6_Rokubacteria
dihydrodipicolinate synthase
13_2_20cm_scaffold_1205_11
RBG_16_RIF_CHLX_70_13_curated, RIF-CHLX, Bacteria

Not on your lists

11181..12041
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QHD3_CATAD
hypothetical protein Tax=RBG_16_RIF_CHLX_70_13_curated
hypothetical protein
13_2_20cm_scaffold_1205_12
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12061..12996)
DNA (936bp) protein (312aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000370A913
luciferase-like protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
luciferase-like protein
13_2_20cm_scaffold_1205_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13004..13891)
DNA (888bp) protein (296aa)
gctB; glutaconate CoA transferase subunit B (EC:2.8.3.-); K01040 glutaconate CoA-transferase, subunit B [EC:2.8.3.12] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00036C1319
coenzyme A transferase
13_2_20cm_scaffold_1205_14
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13963..14799)
DNA (837bp) protein (279aa)
gctA; glutaconate CoA transferase subunit A (EC:2.8.3.12); K01039 glutaconate CoA-transferase, subunit A [EC:2.8.3.12] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
gctA; glutaconate CoA transferase subunit A (EC:2.8.3.12)
Glutaconate CoA-transferase, subunit A n=2 Tax=Saccharopolyspora erythraea RepID=A4FJB8_SACEN
13_2_20cm_scaffold_1205_15
unknown

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comp(14919..14996)
DNA (78bp) protein (26aa)

This feature has no annotations

Displaying 15 items

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