ggKbase home page

13_2_20cm_scaffold_2471

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_2471_1
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

1..690
DNA (690bp) protein (230aa)
gamma-glutamyl kinase (EC:2.7.2.11); K00931 glutamate 5-kinase [EC:2.7.2.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
gamma-glutamyl kinase; K00931 glutamate 5-kinase [EC:2.7.2.11] id=14626914 bin=bin7_NC10_sister species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
glutamate 5-kinase
13_2_20cm_scaffold_2471_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

700..1956
DNA (1257bp) protein (419aa)
gamma-glutamyl phosphate reductase (EC:1.2.1.41); K00147 glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
proA; gamma-glutamylphosphate reductase (EC:1.2.1.41) id=14626913 bin=bin7_NC10_sister species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10 rbh
gamma-glutamyl phosphate reductase (EC:1.2.1.41)
13_2_20cm_scaffold_2471_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1987..2595
DNA (609bp) protein (203aa)
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:3.5.4.4); K00969 nicotinate-nucleotide adenylyltransferase [EC:2.7.7.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Probable nicotinate-nucleotide adenylyltransferase id=3966264 bin=GWA2_Elusimicrobia_69_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
13_2_20cm_scaffold_2471_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2592..2948
DNA (357bp) protein (119aa)
iojap family protein; K09710 ribosome-associated protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Iojap-like protein id=4787949 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum ruminis genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iojap family protein
13_2_20cm_scaffold_2471_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3041..3406
DNA (366bp) protein (122aa)
transcriptional regulators, TraR/DksA family Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
transcriptional regulators, TraR/DksA family id=14626910 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
transcriptional regulators, TraR/DksA family
13_2_20cm_scaffold_2471_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3684..4334
DNA (651bp) protein (217aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4787945 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_2471_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4274..5197
DNA (924bp) protein (308aa)
amidophosphoribosyltransferase Tax=GWA2_Rokubacteria_73_35_curated
Amidophosphoribosyltransferase, putative id=4787943 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
competence protein ComF
13_2_20cm_scaffold_2471_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

5263..6267
DNA (1005bp) protein (335aa)
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12) Tax=GWA2_Rokubacteria_73_35_curated
cbbG; glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) id=4787941 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis rbh
13_2_20cm_scaffold_2471_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6269..7456
DNA (1188bp) protein (396aa)
phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase id=4828185 bin=GWC2_Methylomirabilis_70_16 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_2471_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7453..8232
DNA (780bp) protein (260aa)
tpiA; triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
triosephosphate isomerase (EC:5.3.1.1)
Triosephosphate isomerase id=4787937 bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_2471_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

8237..8578
DNA (342bp) protein (114aa)
secG; preprotein translocase subunit SecG; K03075 preprotein translocase subunit SecG Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Preprotein translocase, SecG subunit id=4787935 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
preprotein translocase subunit SecG
13_2_20cm_scaffold_2471_12
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

8580..10229
DNA (1650bp) protein (550aa)
ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Oligopeptide-binding protein id=2992161 bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide-binding protein
13_2_20cm_scaffold_2471_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10863..11204
DNA (342bp) protein (114aa)
ABC transporter permease; K02033 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Binding-protein-dependent transport systems inner membrane component id=4787931 bin=GWA2_Methylomirabilis_73_35 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport systems inner membrane component
13_2_20cm_scaffold_2471_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11246..11479
DNA (234bp) protein (78aa)
peptide ABC transporter, membrane protein; K02034 peptide/nickel transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
Peptide ABC transporter, membrane protein id=4787929 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
binding-protein-dependent transport system inner membrane protein
13_2_20cm_scaffold_2471_15
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11461..11991
DNA (531bp) protein (177aa)
peptide ABC transporter permease; K02034 peptide/nickel transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Peptide ABC transporter, membrane protein id=4787929 bin=GWA2_Methylomirabilis_73_35 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptide ABC transporter membrane protein
13_2_20cm_scaffold_2471_16
R_Gammaproteobacteria_56_15, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12173..12673
DNA (501bp) protein (167aa)
rsbT; switch protein/serine-threonine kinase; controls the activity of the piezosome (stressosome) (EC:2.7.11.1)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003707C03
anti-sigma regulatory factor, serine/threonine protein kinase Tax=RIFCSPLOWO2_02_FULL_Gammaproteobacteria_56_15_curated
13_2_20cm_scaffold_2471_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

13075..13812
DNA (738bp) protein (246aa)
lipA; lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
lipoate synthase (EC:2.8.1.8)
Lipoyl synthase id=4828152 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Displaying 17 items

View Taxonomy