ggKbase home page

13_2_20cm_scaffold_4801

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_4801_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(1..360)
DNA (360bp) protein (120aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
signAl transduction histidine kinase containing a receiver domain id=14627170 bin=bin7_NC10_sister species=Thermus scotoductus genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=bin7_NC10_sister organism_group=NC10
13_2_20cm_scaffold_4801_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(416..679)
DNA (264bp) protein (88aa)
aldehyde oxidase (EC:1.17.1.4) Tax=GWA2_Rokubacteria_73_35_curated
aldehyde oxidase (EC:1.17.1.4)
Probable aldehyde oxidase and xanthine dehydrogenase family protein transmembrane id=4975508 bin=GWA2_Methylomirabilis_73_35 species=Saccharopolyspora erythraea genus=Saccharopolyspora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4801_3
unknown

Not on your lists

803..1210
DNA (408bp) protein (136aa)

This feature has no annotations

13_2_20cm_scaffold_4801_4
unknown

Not on your lists

1298..2824
DNA (1527bp) protein (509aa)

This feature has no annotations

13_2_20cm_scaffold_4801_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2673..3854)
DNA (1182bp) protein (394aa)
(2Fe-2S)-binding domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
FAD binding domain in molybdopterin dehydrogenase id=4975507 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
(2Fe-2S)-binding domain-containing protein
13_2_20cm_scaffold_4801_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(3908..4084)
DNA (177bp) protein (59aa)
molybdopterin dehydrogenase FAD-binding protein; K03519 carbon-monoxide dehydrogenase medium subunit [EC:1.2.99.2] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
FAD binding domain in molybdopterin dehydrogenase id=4975507 bin=GWA2_Methylomirabilis_73_35 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FAD-binding molybdopterin dehydrogenase protein
13_2_20cm_scaffold_4801_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(4498..4749)
DNA (252bp) protein (84aa)
SpoVT/AbrB domain-containing protein
SpoVT/AbrB domain-containing protein {ECO:0000313|EMBL:AHG92886.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
SpoVT/AbrB domain-containing protein id=4765408 bin=GWC2_Methylomirabilis_70_24 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_2_20cm_scaffold_4801_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(4864..5652)
DNA (789bp) protein (263aa)
fabG7; 3-ketoacyl-(acyl-carrier-protein) reductase (EC:1.1.1.100)
3-ketoacyl-(Acyl-carrier-protein) reductase id=4975506 bin=GWA2_Methylomirabilis_73_35 species=Pseudomonas pseudoalcaligenes genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short-chain dehydrogenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_2_20cm_scaffold_4801_9
unknown

Not on your lists

5922..7274
DNA (1353bp) protein (451aa)

This feature has no annotations

13_2_20cm_scaffold_4801_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7211..9133)
DNA (1923bp) protein (641aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01473 N-methylhydantoinase A [EC:3.5.2.14] Tax=GWA2_Rokubacteria_73_35_curated
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9)
5-oxoprolinase (ATP-hydrolyzing) id=4534454 bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4801_11
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

9256..10263
DNA (1008bp) protein (336aa)
proline racemase (EC:5.1.1.4)
Proline racemase {ECO:0000313|EMBL:ADL08413.1}; EC=5.1.1.4 {ECO:0000313|EMBL:ADL08413.1};; TaxID=555079 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family
Proline racemase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RYI9_THEOJ
13_2_20cm_scaffold_4801_12
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10271..11521
DNA (1251bp) protein (417aa)
FAD dependent oxidoreductase n=2 Tax=Burkholderia cenocepacia RepID=A0KDV7_BURCH
Pyridine nucleotide-disulfide oxidoreductase family protein {ECO:0000313|EMBL:KGC06863.1}; TaxID=292 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholde
FAD dependent oxidoreductase
13_2_20cm_scaffold_4801_13
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(11581..12288)
DNA (708bp) protein (236aa)
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family (EC:3.6.3.17)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family {ECO:0000313|EMBL:AFZ08605.1}; EC=3.6.3.17 {ECO:0000313|EMBL:AFZ08605.1};; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillator
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VN22_9CYAN
13_2_20cm_scaffold_4801_14
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

Not on your lists

comp(12291..13703)
DNA (1413bp) protein (471aa)
ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter) putative branched-chain amino acid transport protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MFC7_9BACT
branched-chain amino acid ABC transporter permease/ATP-binding protein
ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter) putative branched-chain amino acid transport protein {ECO:0000313|EMBL:CBE68456.1}; TaxID=671143 species="Bacteria; candidate
13_2_20cm_scaffold_4801_15
Calothrix parietina, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(14204..14821)
DNA (618bp) protein (206aa)
Inner-membrane translocator n=1 Tax=Calothrix sp. PCC 6303 RepID=K9V980_9CYAN
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:AFZ04406.1}; Flags: Precursor;; TaxID=1170562 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calothrix.;" source="Calothrix sp. PCC 6303.;"
Displaying 15 items

View Taxonomy