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13_2_20cm_scaffold_1942

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_1942_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3..743
DNA (741bp) protein (247aa)
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family id=1829182 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family Tax=GWA2_Rokubacteria_73_35_curated
amino acid/amide ABC transporter ATP-binding protein 2, HAAT family
13_2_20cm_scaffold_1942_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

756..1202
DNA (447bp) protein (149aa)
glbN; hemoglobin-like protein HBN; K06886 hemoglobin Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Hemoglobin-like protein HbN id=1829184 bin=GWA2_Methylomirabilis_73_35 species=Cupriavidus necator genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glbN; hemoglobin-like protein HbN
13_2_20cm_scaffold_1942_3
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

1277..2497
DNA (1221bp) protein (407aa)
coenzyme F390 synthetase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
Coenzyme F390 synthetase id=4607297 bin=GWC2_Methylomirabilis_70_16 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
coenzyme F390 synthetase
13_2_20cm_scaffold_1942_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2705..3577
DNA (873bp) protein (291aa)
acyl-CoA dehydrogenase-like; K00249 acyl-CoA dehydrogenase [EC:1.3.99.3] Tax=GWA2_Rokubacteria_73_35_curated
Acyl-CoA dehydrogenase id=1829190 bin=GWA2_Methylomirabilis_73_35 species=Citreicella sp. 357 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-CoA dehydrogenase-like
13_2_20cm_scaffold_1942_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

3585..4427
DNA (843bp) protein (281aa)
ribokinase-like domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
ribokinase-like domain-containing protein id=14626937 bin=bin7_NC10_sister species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
ribokinase-like domain-containing protein
13_2_20cm_scaffold_1942_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

4476..4859
DNA (384bp) protein (128aa)
hypothetical protein; K09143 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein; K09143 hypothetical protein id=14626940 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_1942_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4879..5529
DNA (651bp) protein (217aa)
transaldolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Probable transaldolase id=4607301 bin=GWC2_Methylomirabilis_70_16 species=[Clostridium] sticklandii genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tal; transaldolase
13_2_20cm_scaffold_1942_8
Streptomyces afghaniensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5589..6026
DNA (438bp) protein (146aa)
membrane protein n=1 Tax=Streptomyces chartreusis RepID=UPI000262E7F6
Uncharacterized protein {ECO:0000313|EMBL:EPJ40965.1}; TaxID=1283301 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces afghaniensis 772.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
13_2_20cm_scaffold_1942_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6134..7015)
DNA (882bp) protein (294aa)
Luciferase-like, subgroup id=4766108 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase-like protein Tax=GWA2_Rokubacteria_73_35_curated
luciferase-like protein
13_2_20cm_scaffold_1942_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7027..8700)
DNA (1674bp) protein (558aa)
AMP-dependent synthetase and ligase Tax=GWA2_Rokubacteria_73_35_curated
AMP-dependent synthetase and ligase id=14626952 bin=bin7_NC10_sister species=Ralstonia pickettii genus=Ralstonia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_1942_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8787..9488)
DNA (702bp) protein (234aa)
GlcNAc-PI de-N-acetylase family id=4766137 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GlcNAc-PI de-N-acetylase family Tax=GWA2_Rokubacteria_73_35_curated
GlcNAc-PI de-N-acetylase family
13_2_20cm_scaffold_1942_12
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9592..11205
DNA (1614bp) protein (538aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
id=4491880 bin=GWC2_Chloroflexi_73_18 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
13_2_20cm_scaffold_1942_13
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11391..11873
DNA (483bp) protein (161aa)
Flagellar hook-length control protein FliK {ECO:0000313|EMBL:EWC62818.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineo
13_2_20cm_scaffold_1942_14
R_OD1_Azambacteria_44_14, Azambacteria, Parcubacteria, Bacteria

Not on your lists

11983..13491
DNA (1509bp) protein (503aa)
G8 domain-containing protein Tax=RIFCSPLOWO2_02_FULL_OD1_Azambacteria_44_14_curated
13_2_20cm_scaffold_1942_15
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13546..16482
DNA (2937bp) protein (979aa)
UvrABC system protein A n=1 Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G9Q4_GEOUR rbh
excinuclease ABC subunit A
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_0
13_2_20cm_scaffold_1942_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16632..18065
DNA (1434bp) protein (478aa)
pyk; pyruvate kinase Pyk (EC:2.7.1.40) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Pyruvate kinase id=3055333 bin=GWA2_Methylomirabilis_73_35 species=Microcoleus sp. PCC 7113 genus=Microcoleus taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
pyruvate kinase
13_2_20cm_scaffold_1942_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

18080..21634
DNA (3555bp) protein (1185aa)
multi-sensor hybrid histidine kinase Tax=GWA2_Rokubacteria_73_35_curated
multi-sensor signal transduction histidine kinase id=14626073 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-sensor signal transduction histidine kinase
13_2_20cm_scaffold_1942_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21676..24435
DNA (2760bp) protein (920aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Multi-sensor signal transduction histidine kinase id=3055340 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor signal transduction histidine kinase
13_2_20cm_scaffold_1942_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24432..26564
DNA (2133bp) protein (711aa)
multi-sensor hybrid histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
multi-sensor signal transduction histidine kinase id=14626073 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
multi-sensor hybrid histidine kinase
13_2_20cm_scaffold_1942_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26580..27368
DNA (789bp) protein (263aa)
acyl-CoA hydratase (EC:4.2.1.17); K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
enoyl-CoA hydratase (EC:4.2.1.17) id=14626853 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10 rbh
enoyl-CoA hydratase (EC:4.2.1.17)
13_2_20cm_scaffold_1942_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

27491..28120
DNA (630bp) protein (210aa)
Putative uncharacterized protein id=3055344 bin=GWA2_Methylomirabilis_73_35 species=uncultured marine microorganism HF4000_005I08 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
putative uncharacterized protein
13_2_20cm_scaffold_1942_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(28277..29224)
DNA (948bp) protein (316aa)
Hypothetical membrane protein id=3055346 bin=GWA2_Methylomirabilis_73_35 species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical membrane protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_2_20cm_scaffold_1942_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(29277..29918)
DNA (642bp) protein (214aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14626844 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_2_20cm_scaffold_1942_24
unknown

Not on your lists

comp(29920..30408)
DNA (489bp) protein (163aa)

This feature has no annotations

13_2_20cm_scaffold_1942_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

30425..31507
DNA (1083bp) protein (361aa)
aspartate aminotransferase (transaminase a) (aspat) (EC:2.6.1.1) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
aminotransferase (EC:2.6.1.-)
Aspartate aminotransferase (Transaminase a) (Aspat) id=4956290 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_2_20cm_scaffold_1942_26
unknown

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31513..31593
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 26 items

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