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13_2_20cm_scaffold_4564

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_2_20cm_scaffold_4564_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

2..1183
DNA (1182bp) protein (394aa)
ymdA; 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC:3.1.4.16); K06950 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribonuclease Y id=4039892 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_2_20cm_scaffold_4564_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1189..1965
DNA (777bp) protein (259aa)
metallophosphoesterase; K09769 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Metallophosphoesterase id=3975805 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_2_20cm_scaffold_4564_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1982..2833
DNA (852bp) protein (284aa)
methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] Tax=RIFCSPLOWO2_12_FULL_Roku
Bifunctional protein FolD id=4039890 bin=GWC2_Methylomirabilis_70_24 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good rbh
methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase
13_2_20cm_scaffold_4564_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2830..4119
DNA (1290bp) protein (430aa)
xseA; exodeoxyribonuclease VII large subunit (EC:3.1.11.6); K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] Tax=GWA2_Rokubacteria_73_35_curated
exodeoxyribonuclease VII large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] id=14627995 bin=bin7_NC10_sister species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10 rbh
exodeoxyribonuclease VII large subunit
13_2_20cm_scaffold_4564_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4100..4339
DNA (240bp) protein (80aa)
exodeoxyribonuclease VII, small subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Exodeoxyribonuclease 7 small subunit id=3975799 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
exodeoxyribonuclease VII small subunit
13_2_20cm_scaffold_4564_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

4336..5232
DNA (897bp) protein (299aa)
ispA; geranylgeranyl pyrophosphate synthase; K13789 geranylgeranyl diphosphate synthase, type II [EC:2.5.1.1 2.5.1.10 2.5.1.29] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Polyprenyl synthetase id=3975797 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
trans-isoprenyl diphosphate synthase
13_2_20cm_scaffold_4564_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5234..6523
DNA (1290bp) protein (430aa)
phosphopyruvate hydratase; K01689 enolase [EC:4.2.1.11] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
enolase (EC:4.2.1.11)
Enolase id=3975795 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Thermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4564_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6520..6834
DNA (315bp) protein (105aa)
septum formation initiator; K13052 cell division protein DivIC Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Septum formation initiator family protein id=3975793 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
septum formation initiator
13_2_20cm_scaffold_4564_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6846..8288
DNA (1443bp) protein (481aa)
Glycosyl transferase, group 2 family protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glycosyl transferase, group 2 family protein id=3975791 bin=GWA2_Methylomirabilis_73_35 species=Labrenzia alexandrii genus=Labrenzia taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_2_20cm_scaffold_4564_10
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8285..9139
DNA (855bp) protein (285aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036D7CFD
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
alpha/beta hydrolase fold protein
13_2_20cm_scaffold_4564_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(9124..9696)
DNA (573bp) protein (191aa)
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein id=14627586 bin=bin7_NC10_sister species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
quaternary amine uptake ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
13_2_20cm_scaffold_4564_12
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(9693..10103)
DNA (411bp) protein (137aa)
ABC transporter, quaternary amine uptake transporter (QAT) family, substrate-binding protein n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L3G7_THERP
quaternary amine uptake ABC transporter substrate-binding protein
ABC transporter, quaternary amine uptake transporter (QAT) family, substrate-binding protein {ECO:0000313|EMBL:ACM07127.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrob
13_2_20cm_scaffold_4564_13
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10136..10603)
DNA (468bp) protein (156aa)
Putative aromatic-ring-hydroxylating dioxygenase, beta subunit n=1 Tax=Variovorax paradoxus B4 RepID=T1XAI9_VARPD
putative aromatic-ring-hydroxylating dioxygenase, beta subunit Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
putative aromatic-ring-hydroxylating dioxygenase, beta subunit
13_2_20cm_scaffold_4564_14
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10617..11933)
DNA (1317bp) protein (439aa)
Rieske (2Fe-2S) domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CZK5_VARPS
Rieske (2Fe-2S) domain-containing protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Rieske (2Fe-2S) domain protein
13_2_20cm_scaffold_4564_15
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12077..13144
DNA (1068bp) protein (356aa)
Glycosyl hydrolase, family 88 id=1270828 bin=GWE1_Burkholderiales_65_30 species=Cupriavidus pinatubonensis genus=Cupriavidus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
glycosyl hydrolase family protein Tax=GWE1_Burkholderiales_65_30_curated
glycosyl hydrolase family protein
13_2_20cm_scaffold_4564_16
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13400..13948
DNA (549bp) protein (183aa)
Putative Peptidoglycan-binding domain 1 protein n=1 Tax=Methylomicrobium alcaliphilum (strain DSM 19304 / NCIMB 14124 / VKM B-2133 / 20Z) RepID=G4T015_META2
peptidoglycan binding domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
peptidoglycan-binding domain 1 protein
Displaying 16 items

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