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13_1_40cm_scaffold_6031

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Displaying 19 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_6031_1
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2..133
DNA (132bp) protein (44aa)
Integral membrane sensor signal transduction histidine kinase id=1746130 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
hypothetical protein
13_1_40cm_scaffold_6031_2
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(273..623)
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AG83_RHIET
Uncharacterized protein {ECO:0000313|EMBL:EGE56510.1}; TaxID=993047 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sourc
13_1_40cm_scaffold_6031_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

999..1706
DNA (708bp) protein (236aa)
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Sulfoxide reductase catalytic subunit YedY id=1746038 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
13_1_40cm_scaffold_6031_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

1714..2364
DNA (651bp) protein (217aa)
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sulfoxide reductase heme-binding subunit YedZ id=1746036 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
13_1_40cm_scaffold_6031_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2713..3687
DNA (975bp) protein (325aa)
M16B family peptidase (EC:3.4.24.-); K01417 [EC:3.4.24.-] Tax=GWA2_Rokubacteria_73_35_curated
processing peptidase (EC:3.4.24.64)
Peptidase M16 domain protein id=1746030 bin=GWA2_Methylomirabilis_73_35 species=Leptolyngbya sp. PCC 7375 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_6031_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3684..4994
DNA (1311bp) protein (437aa)
processing peptidase (EC:3.4.24.64) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
processing peptidase (EC:3.4.24.64)
Processing peptidase id=2874872 bin=GWC2_Methylomirabilis_70_16 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_6031_7
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(5014..5208)
DNA (195bp) protein (65aa)
id=14627824 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
13_1_40cm_scaffold_6031_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5434..6300
DNA (867bp) protein (289aa)
putative VacJ-like lipoprotein; K04754 lipoprotein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative lipoprotein id=3461021 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative VacJ-like lipoprotein
13_1_40cm_scaffold_6031_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6302..7240
DNA (939bp) protein (313aa)
Putative uncharacterized protein id=2475294 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
putative cytochrome c
13_1_40cm_scaffold_6031_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7379..8659
DNA (1281bp) protein (427aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C1V3_DESTA id=5223401 bin=16ft_combo_ws3_JS1 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
response regulator in two-component reguatory system, sigma54 dependent transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Fis family transcriptional regulator
13_1_40cm_scaffold_6031_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8922..9893
DNA (972bp) protein (324aa)
Pc22g03720 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=3461025 bin=GWA2_Methylomirabilis_73_35 species=Leishmania mexicana genus=Leishmania taxon_order=Kinetoplastida taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_6031_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10359..11921
DNA (1563bp) protein (521aa)
Response regulator receiver modulated metal dependent phosphohydrolase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Response regulator receiver modulated metal dependent phosphohydrolase id=3461027 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver modulated metal dependent phosphohydrolase
13_1_40cm_scaffold_6031_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11918..12292
DNA (375bp) protein (125aa)
spo0F; stage 0 sporulation protein F (EC:2.7.3.-); K02490 two-component system, response regulator, stage 0 sporulation protein F Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sporulation initiation phosphotransferase F (Stage 0 sporulation protein F) id=3461031 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
response regulator receiver protein
13_1_40cm_scaffold_6031_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12301..13095
DNA (795bp) protein (265aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Methyltransferase type 11 id=3461034 bin=GWA2_Methylomirabilis_73_35 species=Streptomyces hygroscopicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_6031_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13099..13905
DNA (807bp) protein (269aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Putative methyltransferase protein id=3461244 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
yqeM; methyltransferase domain protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_6031_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13948..14691
DNA (744bp) protein (248aa)
acetyltransferase, ribosomal protein N-acetylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
acetyltransferase id=14626494 bin=bin7_NC10_sister species=Paenibacillus polymyxa genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
acetyltransferase, ribosomal protein N-acetylase
13_1_40cm_scaffold_6031_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14678..16174
DNA (1497bp) protein (499aa)
putative two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative two-component hybrid sensor and regulator id=14626495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin7_NC10_sister organism_group=NC10
chemotaxis protein CheY
13_1_40cm_scaffold_6031_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16204..16746
DNA (543bp) protein (181aa)
multi-sensor signal transduction histidine kinase (EC:2.7.13.3)
putative two-component hybrid sensor and regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative two-component hybrid sensor and regulator id=14626495 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_6031_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16763..18382
DNA (1620bp) protein (540aa)
response regulator receiver sensor signal transduction histidine kinase (EC:2.7.13.3)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PAS domain S-box id=14626496 bin=bin7_NC10_sister species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Displaying 19 items

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