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13_1_40cm_scaffold_250

Search features with annotation key words

Displaying items 1-30 of 90 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_250_1
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

comp(62..328)
DNA (267bp) protein (89aa)
site specific recombinase Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
13_1_40cm_scaffold_250_2
unknown

Not on your lists

comp(457..714)
DNA (258bp) protein (86aa)

This feature has no annotations

13_1_40cm_scaffold_250_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1021..1266
DNA (246bp) protein (82aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI00034B7F11
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
hypothetical protein
13_1_40cm_scaffold_250_4
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

1245..1616
DNA (372bp) protein (124aa)
hypothetical protein, partial n=1 Tax=Fischerella muscicola RepID=UPI0003739FB2
growth inhibitor protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
growth inhibitor protein
13_1_40cm_scaffold_250_5
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2480..3091)
DNA (612bp) protein (204aa)
putative RNA methylase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
ribosomal protein L11 methylase id=14430730 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
RNA methylase family protein
13_1_40cm_scaffold_250_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3103..4017)
DNA (915bp) protein (305aa)
RpoD subfamily RNA polymerase sigma-70 subunit; K03086 RNA polymerase primary sigma factor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
RNA polymerase sigma factor id=4853978 bin=GWA2_Methylomirabilis_73_35 species=Selenomonas noxia genus=Selenomonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RpoD family RNA polymerase sigma factor
13_1_40cm_scaffold_250_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4010..4822)
DNA (813bp) protein (271aa)
peptidase M23B Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
NlpD; membrane protein id=14626518 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
peptidase M23
13_1_40cm_scaffold_250_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4819..5118)
DNA (300bp) protein (100aa)
acylphosphatase; K01512 acylphosphatase [EC:3.6.1.7] Tax=GWA2_Rokubacteria_73_35_curated
Acylphosphatase id=4853977 bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acylphosphatase
13_1_40cm_scaffold_250_trna_3
unknown

Not on your lists

comp(5195..5268)
DNA (74bp)
transferRNA
13_1_40cm_scaffold_250_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5293..5943)
DNA (651bp) protein (217aa)
protein-L-isoaspartate O-methyltransferase; K00573 protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Protein-L-isoaspartate O-methyltransferase 1 id=4853976 bin=GWA2_Methylomirabilis_73_35 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
protein-L-isoaspartate O-methyltransferase
13_1_40cm_scaffold_250_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(5947..6717)
DNA (771bp) protein (257aa)
surE; stationary phase survival protein SurE; K03787 5'-nucleotidase [EC:3.1.3.5] Tax=GWA2_Rokubacteria_73_35_curated
5'-nucleotidase SurE id=4853975 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
surE; 5'(3')-nucleotidase/polyphosphatase
13_1_40cm_scaffold_250_trna_2
unknown

Not on your lists

comp(6734..6807)
DNA (74bp)
transferRNA
13_1_40cm_scaffold_250_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6847..7200)
DNA (354bp) protein (118aa)
Regulatory protein MerR id=4555202 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
regulatory protein MerR Tax=GWA2_Rokubacteria_70_23_curated
regulatory protein MerR
13_1_40cm_scaffold_250_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(7197..7475)
DNA (279bp) protein (93aa)
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, alpha subunit id=4853973 bin=GWA2_Methylomirabilis_73_35 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integration host factor subunit alpha
13_1_40cm_scaffold_250_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(7472..7813)
DNA (342bp) protein (114aa)
CutA1 divalent ion tolerance protein; K03926 periplasmic divalent cation tolerance protein id=14626512 bin=bin7_NC10_sister species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
CutA1 divalent ion tolerance protein; K03926 periplasmic divalent cation tolerance protein Tax=CSP1_6_Rokubacteria
CutA1 divalent ion tolerance protein
13_1_40cm_scaffold_250_14
Mycobacterium liflandii, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8236..8625
DNA (390bp) protein (130aa)
PE-PGRS family protein n=1 Tax=Mycobacterium liflandii (strain 128FXT) RepID=L7VAY8_MYCL1
PE-PGRS family protein
PE-PGRS family protein {ECO:0000313|EMBL:AGC64966.1}; TaxID=459424 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium liflandii (strain 128F
13_1_40cm_scaffold_250_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(8687..9427)
DNA (741bp) protein (247aa)
Uncharacterized protein id=4853971 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_250_16
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9487..10833)
DNA (1347bp) protein (449aa)
GTPase Der id=4853970 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
small GTP-binding protein domain-containing protein; K03977 GTP-binding protein Tax=GWA2_Rokubacteria_73_35_curated
engA; GTP-binding protein Der
13_1_40cm_scaffold_250_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(10869..12206)
DNA (1338bp) protein (446aa)
PDZ domain-containing protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4853969 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_250_18
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(12181..12753)
DNA (573bp) protein (191aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase id=4853968 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase Tax=GWA2_Rokubacteria_73_35_curated
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
13_1_40cm_scaffold_250_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12775..14058)
DNA (1284bp) protein (428aa)
GTP-binding protein HflX; K03665 GTP-binding protein HflX Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
GTPase HflX id=4853967 bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
GTP-binding protein HflX
13_1_40cm_scaffold_250_20
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(14055..14993)
DNA (939bp) protein (313aa)
tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=GWA2_Rokubacteria_73_35_curated
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75)
tRNA dimethylallyltransferase id=4853966 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_250_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(15010..16692)
DNA (1683bp) protein (561aa)
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
DNA mismatch repair protein MutL id=4430852 bin=GWC2_Methylomirabilis_70_24 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
mutL; DNA mismatch repair protein
13_1_40cm_scaffold_250_22
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

17168..18589
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:831 RepID=R5I756_9BACT
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_scaffold_250_23
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

18695..19525
DNA (831bp) protein (277aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
13_1_40cm_scaffold_250_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(19440..19895)
DNA (456bp) protein (152aa)
Histidine triad (HIT) protein id=3360718 bin=GWA2_Methylomirabilis_73_35 species=Thermococcus sp. CL1 genus=Thermococcus taxon_order=Thermococcales taxon_class=Thermococci phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine triad (HIT) protein Tax=GWA2_Rokubacteria_73_35_curated
histidine triad (HIT) protein
13_1_40cm_scaffold_250_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19939..20214)
DNA (276bp) protein (92aa)
hupA1; DNA-binding protein HU 1; K05788 integration host factor subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Integration host factor, beta subunit, putative id=3360720 bin=GWA2_Methylomirabilis_73_35 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hupA1; DNA-binding protein HU 1
13_1_40cm_scaffold_250_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(20421..21305)
DNA (885bp) protein (295aa)
Signal peptide peptidase SppA, 36K type (EC:3.1.3.26) Tax=GWA2_Rokubacteria_73_35_curated
peptidase S49, putative signal peptide peptidase SppA (EC:3.4.21.-)
Peptidase S49, putative signal peptide peptidase SppA id=4143290 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_250_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(21314..23035)
DNA (1722bp) protein (574aa)
rpsA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
rpsA; 30S ribosomal protein S1 id=14627234 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
rpsA; 30S ribosomal protein S1
13_1_40cm_scaffold_250_28
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(23052..23705)
DNA (654bp) protein (218aa)
cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
1-acyl-sn-glycerol-3-phosphate acyltransferase id=14627233 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
1-acyl-sn-glycerol-3-phosphate acyltransferase
Displaying items 1-30 of 90 in total

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