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13_1_40cm_scaffold_29

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Displaying items 1-30 of 60 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_29_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..990)
DNA (990bp) protein (330aa)
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
gltD; glutamate synthase [NADPH] small chain (EC:1.4.1.13)
Glutamate synthase [NADPH] small chain, (NADPH-GOGAT) id=4115281 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_29_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(983..5554)
DNA (4572bp) protein (1524aa)
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13) Tax=GWA2_Rokubacteria_73_35_curated
gltB; glutamate synthase [NADPH] large chain (EC:1.4.1.13)
Glutamate synthase [NADPH] large chain (NADPH-GOGAT) n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MM42_9BACT
13_1_40cm_scaffold_29_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5671..6597
DNA (927bp) protein (309aa)
transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
LysR substrate-binding protein id=4115284 bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
transcriptional regulator
13_1_40cm_scaffold_29_4
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6608..7738
DNA (1131bp) protein (377aa)
Xaa-Pro aminopeptidase id=14626461 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Xaa-Pro aminopeptidase Tax=CSP1_6_Rokubacteria
Xaa-Pro aminopeptidase
13_1_40cm_scaffold_29_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7829..8353
DNA (525bp) protein (175aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Hypothetical conserved protein id=4115285 bin=GWA2_Methylomirabilis_73_35 species=uncultured alpha proteobacterium genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative signal-transduction protein containing cAMP-binding and CBS domains
13_1_40cm_scaffold_29_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8563..10434
DNA (1872bp) protein (624aa)
2-oxoacid:acceptor oxidoreductase subunit alpha (EC:1.2.7.3); K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC:1.2.7.3] Tax=GWA2_Rokubacteria_73_35_curated
2-oxoacid:acceptor oxidoreductase subunit alpha (EC:1.2.7.3)
2-oxoglutarate ferredoxin oxidoreductase subunit alpha id=4115286 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_29_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

10431..11459
DNA (1029bp) protein (343aa)
2-oxoglutarate ferredoxin oxidoreductase subunit beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
2-oxoglutarate ferredoxin oxidoreductase subunit beta id=4115287 bin=GWA2_Methylomirabilis_73_35 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thiamine pyrophosphate domain-containing TPP-binding protein
13_1_40cm_scaffold_29_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11603..13048
DNA (1446bp) protein (482aa)
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15) Tax=GWA2_Rokubacteria_73_35_curated
glcD; glycolate oxidase subunit GlcD (EC:1.1.3.15)
Glycolate oxidase, subunit GlcD id=4143462 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_29_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

13061..14380
DNA (1320bp) protein (440aa)
FAD linked oxidase-like protein id=4115289 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
FAD linked oxidase-like protein Tax=GWA2_Rokubacteria_73_35_curated
FAD linked oxidase-like protein
13_1_40cm_scaffold_29_10
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

14380..15642
DNA (1263bp) protein (421aa)
Uncharacterized protein id=4115290 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_29_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15650..15976
DNA (327bp) protein (109aa)
Cupin domain protein id=4143459 bin=GWF2_Methylomirabilis_70_14 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cupin domain-containing protein Tax=GWA2_Rokubacteria_73_35_curated
cupin 2 barrel domain-containing protein
13_1_40cm_scaffold_29_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15973..16785
DNA (813bp) protein (271aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4143458 bin=GWF2_Methylomirabilis_70_14 species=Desulfomicrobium baculatum genus=Desulfomicrobium taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_29_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

16782..18176
DNA (1395bp) protein (465aa)
iron-sulfur cluster binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
(4Fe-4S) cluster-containing protein id=4115293 bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
iron-sulfur cluster binding protein
13_1_40cm_scaffold_29_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18173..18910
DNA (738bp) protein (246aa)
hypothetical protein; K00782 hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4115294 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_29_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18903..19304
DNA (402bp) protein (134aa)
Putative uncharacterized protein id=4115295 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_29_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

19310..20068
DNA (759bp) protein (253aa)
HAD superfamily hydrolase; K07025 putative hydrolase of the HAD superfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
HAD superfamily (Subfamily IA) hydrolase, TIGR02254 id=4115296 bin=GWA2_Methylomirabilis_73_35 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
HAD family hydrolase
13_1_40cm_scaffold_29_17
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

20155..21090
DNA (936bp) protein (312aa)
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] Tax=GWA2_Rokubacteria_73_35_curated
Thioredoxin reductase id=4115297 bin=GWA2_Methylomirabilis_73_35 species=Ignavibacterium album genus=Ignavibacterium taxon_order=Ignavibacteriales taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioredoxin reductase
13_1_40cm_scaffold_29_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(21122..21877)
DNA (756bp) protein (252aa)
putative L-aspartate dehydrogenase; K06989 aspartate dehydrogenase [EC:1.4.1.21] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Probable L-aspartate dehydrogenase id=4115298 bin=GWA2_Methylomirabilis_73_35 species=Rhodopseudomonas palustris genus=Rhodopseudomonas taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative L-aspartate dehydrogenase
13_1_40cm_scaffold_29_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22242..22952
DNA (711bp) protein (237aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4115299 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_29_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

22945..24333
DNA (1389bp) protein (463aa)
hypothetical protein; K09760 DNA recombination protein RmuC Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Conserved uncharacterized protein id=4115300 bin=GWA2_Methylomirabilis_73_35 species=Stigmatella aurantiaca genus=Stigmatella taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative DNA recombination protein RmuC
13_1_40cm_scaffold_29_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24330..26084
DNA (1755bp) protein (585aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Glr3452 protein id=4115301 bin=GWA2_Methylomirabilis_73_35 species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_29_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

26113..26415
DNA (303bp) protein (101aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4115302 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_29_23
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

26425..27654
DNA (1230bp) protein (410aa)
acetylornithine deacetylase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase id=4555257 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_29_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27651..28877
DNA (1227bp) protein (409aa)
dioxygenase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4961237 bin=GWA2_Methylomirabilis_73_35 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dioxygenase
13_1_40cm_scaffold_29_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

28877..29332
DNA (456bp) protein (152aa)
Putative uncharacterized protein id=4961238 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K09986 hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_29_26
GWB2_Chloroflexi_54_36_curated, Chloroflexi, Bacteria

Not on your lists

29347..29661
DNA (315bp) protein (105aa)
Putative uncharacterized protein id=2164662 bin=GWB2_Chloroflexi_54_36 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB2_Chloroflexi_54_36 organism_group=Chloroflexi organism_desc=a81
hypothetical protein Tax=GWB2_Chloroflexi_54_36_curated
13_1_40cm_scaffold_29_27
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

29864..30082
DNA (219bp) protein (73aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
hypothetical protein id=14627837 bin=bin7_NC10_sister species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_29_28
R_NC10_66_22, NC10, Bacteria

Not on your lists

30087..30440
DNA (354bp) protein (118aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
dctP3; TRAP dicarboxylate transporter subunit DctP id=14429548 bin=bin3_NC10 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
C4-dicarboxylate ABC transporter
13_1_40cm_scaffold_29_29
R_NC10_66_22, NC10, Bacteria

Not on your lists

30437..31006
DNA (570bp) protein (190aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
dctP3; TRAP dicarboxylate transporter subunit DctP id=14429548 bin=bin3_NC10 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
TRAP dicarboxylate transporter subunit DctP
13_1_40cm_scaffold_29_30
CSP1_5_NC10, NC10, Bacteria

Not on your lists

31058..31528
DNA (471bp) protein (157aa)
putative TRAP-type C4-dicarboxylate transport system, small permease component id=14429547 bin=bin3_NC10 tax=bin3_NC10 organism_group=NC10
putative TRAP-type C4-dicarboxylate transport system, small permease component Tax=CSP1_5_NC10
hypothetical protein
Displaying items 1-30 of 60 in total

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