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13_1_40cm_scaffold_799

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Displaying items 1-30 of 80 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_799_1
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(2..349)
DNA (348bp) protein (116aa)
hypothetical protein id=14625751 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
hypothetical protein Tax=CSP1_6_Rokubacteria
hypothetical protein
13_1_40cm_scaffold_799_2
R_Nitrospirae_62_14, Nitrospirae, Bacteria

Not on your lists

comp(1961..3616)
DNA (1656bp) protein (552aa)
celB; phosphoglucomutase (EC:5.4.2.2); K01835 phosphoglucomutase [EC:5.4.2.2] Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
phosphoglucomutase n=1 Tax=Thiobacillus thioparus RepID=UPI0003762DDB
phosphoglucomutase, alpha-D-glucose phosphate-specific
13_1_40cm_scaffold_799_3

Not on your lists

comp(3639..3953)
DNA (315bp) protein (105aa)
Uncharacterized protein {ECO:0000313|EMBL:KKW30321.1}; TaxID=1618935 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_52_8c.;"
13_1_40cm_scaffold_799_4
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4265..4867)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Amycolatopsis methanolica RepID=UPI00035D83EB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIJ21139.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
13_1_40cm_scaffold_799_trna_1
unknown

Not on your lists

comp(5266..5337)
DNA (72bp)
transferRNA
13_1_40cm_scaffold_799_5
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(5397..6944)
DNA (1548bp) protein (516aa)
oligopeptide ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
Oligopeptide ABC transporter substrate-binding protein id=3716431 bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oligopeptide ABC transporter substrate-binding protein
13_1_40cm_scaffold_799_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(7002..8441)
DNA (1440bp) protein (480aa)
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase id=1884950 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
13_1_40cm_scaffold_799_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8482..9369)
DNA (888bp) protein (296aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4426872 bin=GWC2_Methylomirabilis_70_16 species=Pirellula staleyi genus=Pirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_799_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(9398..10987)
DNA (1590bp) protein (530aa)
ligB; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] Tax=GWA2_Rokubacteria_73_35_curated
ligB; ATP-dependent DNA ligase (EC:6.5.1.1)
Probable DNA ligase id=1884939 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_799_9
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11034..12920
DNA (1887bp) protein (629aa)
Metal dependent phosphohydrolase id=1884935 bin=GWA2_Methylomirabilis_73_35 species=Chloroherpeton thalassium genus=Chloroherpeton taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase Tax=GWA2_Rokubacteria_73_35_curated
metal dependent phosphohydrolase
13_1_40cm_scaffold_799_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12995..13630)
DNA (636bp) protein (212aa)
SOS-response transcriptional repressor, LexA (EC:3.4.21.88)
LexA repressor Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
LexA repressor id=1884925 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_799_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13809..14300)
DNA (492bp) protein (164aa)
putative twin-arginine translocation protein TatB Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Sec-independent protein translocase protein TatA id=1884921 bin=GWA2_Methylomirabilis_73_35 species=Synechococcus sp. RS9917 genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative twin-arginine translocation protein TatB
13_1_40cm_scaffold_799_12
unknown

Not on your lists

14492..14584
DNA (93bp) protein (31aa)

This feature has no annotations

13_1_40cm_scaffold_799_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(14581..15612)
DNA (1032bp) protein (344aa)
two component, sigma54 specific, Fis family transcriptional regulator id=14627680 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
two component, sigma54 specific, Fis family transcriptional regulator Tax=CSP1_6_Rokubacteria
two component sigma-54 specific Fis family transcriptional regulator
13_1_40cm_scaffold_799_14
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

15819..16181
DNA (363bp) protein (121aa)
signal transduction histidine kinase id=14627691 bin=bin7_NC10_sister species=Desulfovibrio longus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
signal transduction histidine kinase Tax=CSP1_6_Rokubacteria
Fis family two component sigma-54 specific transcriptional regulator
13_1_40cm_scaffold_799_15
Geobacter sulfurreducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16261..17463
DNA (1203bp) protein (401aa)
Uncharacterized protein n=2 Tax=Geobacter sulfurreducens RepID=D7AKH5_GEOSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAR35357.1}; TaxID=243231 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter sulfurred
13_1_40cm_scaffold_799_16
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17688..17888
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:ETX09182.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
13_1_40cm_scaffold_799_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17920..20262
DNA (2343bp) protein (781aa)
putative penicillin-binding protein 1B (EC:2.4.1.129 3.4.-.-); K05365 penicillin-binding protein 1B [EC:2.4.1.129 3.4.-.-] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Penicillin-binding protein, 1A family id=3640482 bin=GWC2_Proteo_65_14_Ab886 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Proteo_65_14_Ab886 organism_group=Deltaproteobacteria
1A family penicillin-binding protein
13_1_40cm_scaffold_799_18
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20431..20778
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q0G3_9RHOO
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
hypothetical protein
13_1_40cm_scaffold_799_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

20782..21627
DNA (846bp) protein (282aa)
Iron permease FTR1 n=1 Tax=uncultured prokaryote RepID=H5SCN3_9ZZZZ
iron permease FTR1; K07243 high-affinity iron transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
iron permease FTR1
13_1_40cm_scaffold_799_20
Geobacter sp. OR-1, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21712..22044)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XKL2_DESMR
Helix-hairpin-helix motif protein {ECO:0000313|EMBL:GAM10403.1}; Flags: Precursor;; TaxID=1266765 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.
hypothetical protein
13_1_40cm_scaffold_799_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(22113..22889)
DNA (777bp) protein (259aa)
Probable phosphotransferase id=1884917 bin=GWA2_Methylomirabilis_73_35 species=Paenibacillus sp. oral taxon 786 genus=Paenibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphotransferase Tax=GWA2_Rokubacteria_73_35_curated
HAD family hydrolase
13_1_40cm_scaffold_799_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(22894..24069)
DNA (1176bp) protein (392aa)
glycogen synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycogen synthase id=1884913 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RfaG2; glycosyltransferase
13_1_40cm_scaffold_799_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

24088..24564
DNA (477bp) protein (159aa)
intradiol ring-cleavage dioxygenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
intradiol ring-cleavage dioxygenase id=14625204 bin=bin7_NC10_sister species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
intradiol ring-cleavage dioxygenase
13_1_40cm_scaffold_799_24
CSP1_5_NC10, NC10, Bacteria

Not on your lists

24656..24871
DNA (216bp) protein (72aa)
putative outer membrane protein id=14430016 bin=bin3_NC10 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
putative outer membrane protein Tax=CSP1_5_NC10
outer membrane protein
13_1_40cm_scaffold_799_25
CSP1_5_NC10, NC10, Bacteria

Not on your lists

24888..25187
DNA (300bp) protein (100aa)
hypothetical protein id=14430015 bin=bin3_NC10 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein Tax=CSP1_5_NC10
13_1_40cm_scaffold_799_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(25201..26592)
DNA (1392bp) protein (464aa)
Two component, sigma54 specific, transcriptional regulator, Fis family id=1884909 bin=GWA2_Methylomirabilis_73_35 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sigma-54 dependent DNA-binding response regulator; K07713 two-component system, NtrC family, response regulator HydG Tax=GWA2_Rokubacteria_73_35_curated
zraR7; sigma-54 dependent DNA-binding response regulator
13_1_40cm_scaffold_799_27
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(26585..27925)
DNA (1341bp) protein (447aa)
integral membrane sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Integral membrane sensor signal transduction histidine kinase id=1884757 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
13_1_40cm_scaffold_799_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(28099..28689)
DNA (591bp) protein (197aa)
membrane-associated protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
SNARE associated Golgi protein-like protein id=2913053 bin=GWC2_Methylomirabilis_70_16 species=Isosphaera pallida genus=Isosphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
membrane-associated protein
13_1_40cm_scaffold_799_29
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

28703..29803
DNA (1101bp) protein (367aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyl transferase group 1 id=1884755 bin=GWA2_Methylomirabilis_73_35 species=Desulfarculus baarsii genus=Desulfarculus taxon_order=Desulfarculales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase
Displaying items 1-30 of 80 in total

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