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13_1_40cm_scaffold_83

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Displaying items 1-30 of 61 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_83_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

3..1598
DNA (1596bp) protein (532aa)
Cobalamin uptake ligand-gated TonB-dependent outer membrane channel id=2810438 bin=GWF2_Methylomirabilis_70_14 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
btuB; TonB-dependent outer membrane receptor for cobalamin and Fe transport; K02014 iron complex outermembrane recepter protein Tax=GWA2_Rokubacteria_70_23_curated
btuB; cobalamin uptake ligand-gated TonB-dependent outer membrane channel
13_1_40cm_scaffold_83_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1615..2184
DNA (570bp) protein (190aa)
Uncharacterized conserved protein id=2285119 bin=GWA2_Methylomirabilis_73_35 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_83_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2181..3065
DNA (885bp) protein (295aa)
TonB family protein id=2285121 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
TonB family protein; K03832 periplasmic protein TonB Tax=GWA2_Rokubacteria_73_35_curated
TonB family protein
13_1_40cm_scaffold_83_4
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3118..3609
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XV92_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP37147.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium c
13_1_40cm_scaffold_83_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

4582..5040
DNA (459bp) protein (153aa)
cbiP; adenosylcobyric acid synthase (glutamine-hydrolyzing) (EC:6.3.5.10); K02232 adenosylcobyric acid synthase [EC:6.3.5.10] Tax=GWA2_Rokubacteria_73_35_curated
cobQ; cobyric acid synthase CobQ (EC:6.3.5.10)
Cobyric acid synthase id=2285123 bin=GWA2_Methylomirabilis_73_35 species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_83_6
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6569..6859)
DNA (291bp) protein (97aa)
Putative ScnA-like protein n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=Q1ATN5_RUBXD
putative ScnA-like protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
putative ScnA-like protein
13_1_40cm_scaffold_83_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(6856..7167)
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_APKG5H11 RepID=B3T8H0_9ZZZZ
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
putative ScnB-like protein
13_1_40cm_scaffold_83_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


7509..9056
DNA (1548bp) protein (516aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase id=2610199 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_83_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9767..11590
DNA (1824bp) protein (608aa)
ftsH; cell division protein FtsH; ATP-dependent zinc-metallo protease (EC:3.4.24.-) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ftsH; cell division protein FtsH; ATP-dependent zinc-metallo protease (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH id=2610206 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_83_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11655..12500
DNA (846bp) protein (282aa)
folP; dihydropteroate synthase; K00796 dihydropteroate synthase [EC:2.5.1.15] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Dihydropteroate synthase id=4773680 bin=GWC2_Methylomirabilis_70_16 species=Thermogladius cellulolyticus genus=Thermogladius taxon_order=Desulfurococcales taxon_class=Thermoprotei phylum=Crenarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dihydropteroate synthase
13_1_40cm_scaffold_83_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

12562..13914
DNA (1353bp) protein (451aa)
glmM; phosphoglucosamine mutase; K03431 phosphoglucosamine mutase [EC:5.4.2.10] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Phosphoglucosamine mutase id=4870787 bin=GWC2_Methylomirabilis_70_24 species=Desulfotomaculum hydrothermale genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
glmM; phosphoglucosamine mutase
13_1_40cm_scaffold_83_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13911..14462
DNA (552bp) protein (184aa)
holo-acyl-carrier-protein synthase; K00997 holo-[acyl-carrier protein] synthase [EC:2.7.8.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Holo-[acyl-carrier-protein] synthase id=4773676 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
acpS; acyl carrier protein 4'-phosphopantetheinyltransferase
13_1_40cm_scaffold_83_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

14464..15198
DNA (735bp) protein (245aa)
id=4870785 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
id=3047192 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_83_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

15204..16763
DNA (1560bp) protein (520aa)
yjeF; carbohydrate kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein yjeF id=4773674 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
YjeF-like protein
13_1_40cm_scaffold_83_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

16753..17178
DNA (426bp) protein (142aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized protein family UPF0079, ATPase id=4773673 bin=GWC2_Methylomirabilis_70_16 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_83_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

17278..17946
DNA (669bp) protein (223aa)
DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
DNA repair protein RadC; K03630 DNA repair protein RadC id=14627930 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=bin7_NC10_sister organism_group=NC10
DNA repair protein RadC
13_1_40cm_scaffold_83_17
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

18106..18558
DNA (453bp) protein (151aa)
putative glyoxalase; K07104 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative glyoxalase; K07104 id=14627931 bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
putative glyoxalase
13_1_40cm_scaffold_83_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18567..18761)
DNA (195bp) protein (65aa)
id=4430353 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
id=4430353 Tax=GWA2_Rokubacteria_70_23_curated
13_1_40cm_scaffold_83_19
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(19129..20103)
DNA (975bp) protein (325aa)
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
dihydroorotate dehydrogenase (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] id=14627933 bin=bin7_NC10_sister species=Mycobacterium sp. 155 genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
dihydroorotate dehydrogenase
13_1_40cm_scaffold_83_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

20193..21014
DNA (822bp) protein (274aa)
Uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=14627958 bin=bin7_NC10_sister species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_83_21
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21014..21985
DNA (972bp) protein (324aa)
Lauroyl/myristoyl acyltransferase (EC:2.3.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Lipid A biosynthesis acyltransferase id=3713934 bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lipid A biosynthesis acyltransferase
13_1_40cm_scaffold_83_22
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

21924..23147
DNA (1224bp) protein (408aa)
Beta-ketoacyl synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 id=3713931 bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_scaffold_83_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

23144..23959
DNA (816bp) protein (272aa)
beta-ketoacyl synthase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
putative 3-oxoacyl-ACP synthase I id=14627961 bin=bin7_NC10_sister species=Streptomyces rapamycinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
beta-ketoacyl synthase
13_1_40cm_scaffold_83_24
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

24000..24275
DNA (276bp) protein (92aa)
hypothetical protein; K02078 acyl carrier protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein; K02078 acyl carrier protein id=14627962 bin=bin7_NC10_sister species=Sorangium cellulosum genus=Sorangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_83_25
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

24272..25453
DNA (1182bp) protein (394aa)
3-oxoacyl-(acyl-carrier-protein) synthase II (EC:2.3.1.41)
Beta-ketoacyl synthase id=3713926 bin=GWC2_Methylomirabilis_70_16 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
beta-ketoacyl synthase Tax=GWC2_Rokubacteria_70_16_curated
13_1_40cm_scaffold_83_26
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

25450..26559
DNA (1110bp) protein (370aa)
beta-ketoacyl-acyl-carrier-protein synthase II (EC:2.3.1.179); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Beta-ketoacyl synthase id=3870372 bin=GWF2_Methylomirabilis_70_14 species=Thermomonospora curvata genus=Thermomonospora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3-oxoacyl-(ACP) synthase-like protein
13_1_40cm_scaffold_83_27
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26773..27861
DNA (1089bp) protein (363aa)
glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Glycosyltransferase involved in cell wall biogenesis id=3870373 bin=GWF2_Methylomirabilis_70_14 species=Granulibacter bethesdensis genus=Granulibacter taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyl transferase family protein
13_1_40cm_scaffold_83_28
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

27858..29129
DNA (1272bp) protein (424aa)
monooxygenase FAD-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Flavin-dependent dehydrogenase id=2980067 bin=GWC2_Methylomirabilis_70_16 species=Xanthomonas gardneri genus=Xanthomonas taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
monooxygenase FAD-binding protein
13_1_40cm_scaffold_83_29
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

29307..30500
DNA (1194bp) protein (398aa)
Putative ABC transporter permease protein id=3955116 bin=GWA2_Methylomirabilis_73_35 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter permease; K02004 putative ABC transport system permease protein Tax=GWA2_Rokubacteria_73_35_curated
ABC transporter permease
13_1_40cm_scaffold_83_30
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

30508..31170
DNA (663bp) protein (221aa)
putative ABC transporter ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
ABC-type antimicrobial peptide transport system, ATPase component id=3955117 bin=GWA2_Methylomirabilis_73_35 species=Janthinobacterium sp. HH01 genus=Janthinobacterium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein
Displaying items 1-30 of 61 in total

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