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13_1_40cm_scaffold_1459

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_1459_1
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..699
DNA (699bp) protein (233aa)
Rieske (2Fe-2S) domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CTY7_VARPS
ligX; 2,2'-dihydroxy-3,3'-dimethoxy-5, 5'-dicarboxybiphenyl O-demethylase oxygenase subunit Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
Rieske (2Fe-2S) domain-containing protein
13_1_40cm_scaffold_1459_2
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

687..1766
DNA (1080bp) protein (360aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037706D0
putative extradiol ring-cleavage dioxygenase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
ligZ; 2,2',3-trihydroxy-3'-methoxy-5, 5'-dicarboxybiphenyl dioxygenase
13_1_40cm_scaffold_1459_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1784..2809)
DNA (1026bp) protein (342aa)
Flavin-dependent oxidoreductase, methylene-tetrahydromethanopterin reductase n=1 Tax=Variovorax sp. CF313 RepID=J2SQE1_9BURK
luciferase-like monooxygenase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
luciferase-like monooxygenase
13_1_40cm_scaffold_1459_4
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2962..3306
DNA (345bp) protein (115aa)
peroxidase (EC:1.11.1.7)
Peroxidase n=1 Tax=Burkholderia sp. CCGE1001 RepID=E8YJC9_9BURK
Peroxidase {ECO:0000313|EMBL:KJK10236.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
13_1_40cm_scaffold_1459_5
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3323..3550
DNA (228bp) protein (76aa)
Peroxiredoxin n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GTC0_CUPNN
peroxidase
1-cysteine peroxiredoxin {ECO:0000313|EMBL:EKZ96328.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. H
13_1_40cm_scaffold_1459_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

3626..6019
DNA (2394bp) protein (798aa)
coxL2; carbon-monoxide dehydrogenase large subunit (EC:1.2.99.2) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
coxL2; carbon-monoxide dehydrogenase large subunit (EC:1.2.99.2)
Carbon-monoxide dehydrogenase large subunit n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KNL3_RHISN
13_1_40cm_scaffold_1459_7
Paraprevotella clara, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6016..6390)
DNA (375bp) protein (125aa)
Response regulator receiver domain protein n=2 Tax=Bacteroidetes RepID=F3Y2B6_9FLAO
Response regulator receiver domain protein {ECO:0000313|EMBL:EHH01747.1}; TaxID=762968 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella.;" source="Paraprevo
Fis family transcriptional regulator
13_1_40cm_scaffold_1459_8
RHI_Planctomycetes_52_36, Planctomycetes, Bacteria

Not on your lists

comp(6387..6758)
DNA (372bp) protein (124aa)
Histidine kinase id=4058803 bin=GWC2_Methylomirabilis_70_24 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
two component, sigma54 specific, transcriptional regulator, Fis family; K13599 two-component system, NtrC family, nitrogen regulation response regulator NtrX Tax=RIFCSPHIGHO2_12_FULL_Planctomycetes_52
DNA-binding response regulator
13_1_40cm_scaffold_1459_9
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6840..8492
DNA (1653bp) protein (551aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WB59_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD35425.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG
hypothetical protein
13_1_40cm_scaffold_1459_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8483..8908)
DNA (426bp) protein (142aa)
histidine kinase; K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Histidine kinase id=2285108 bin=GWA2_Methylomirabilis_73_35 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
atoS9; sensory box histidine kinase/response regulator
13_1_40cm_scaffold_1459_11
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(8944..10029)
DNA (1086bp) protein (362aa)
periplasmic component of the Tol biopolymer transport system Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
periplasmic component of the Tol biopolymer transport system id=14626953 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
periplasmic component of the Tol biopolymer transport system
13_1_40cm_scaffold_1459_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10084..11367
DNA (1284bp) protein (428aa)
Amidohydrolase n=1 Tax=Frankia sp. EUN1f RepID=D3D274_9ACTO
amidohydrolase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
amidohydrolase
13_1_40cm_scaffold_1459_13
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11542..13395)
DNA (1854bp) protein (618aa)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rho
Spermidine/putrescine import ATP-binding protein PotA n=1 Tax=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) RepID=POTA_RUBXD
spermidine/putrescine ABC transporter ATP-binding subunit
13_1_40cm_scaffold_1459_14
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13382..14209)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00031DB0D5
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ACL62595.1}; Flags: Precursor;; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales;
13_1_40cm_scaffold_1459_15
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(14215..15288)
DNA (1074bp) protein (358aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030F5E0B
family 1 extracellular solute-binding protein
twin-arginine translocation pathway signal Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
13_1_40cm_scaffold_1459_16
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15466..16272
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI0003718ADC
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
13_1_40cm_scaffold_1459_17
GWC2_Syntrophus_56_31_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16273..17121)
DNA (849bp) protein (283aa)
id=4409653 bin=GWC2_Syntrophus__56_31 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
id=4409653 Tax=GWC2_Syntrophus_56_31_curated
13_1_40cm_scaffold_1459_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(17125..18054)
DNA (930bp) protein (310aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] Tax=GWA2_Rokubacteria_70_23_curated
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
3-hydroxyisobutyrate dehydrogenase id=3352297 bin=GWA2_Methylomirabilis_73_35 species=Roseomonas cervicalis genus=Roseomonas taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_1459_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18064..18549)
DNA (486bp) protein (162aa)
Competence/damage-inducible protein cinA id=4829158 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative competence-damaged protein, CinA like protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
competence/damage-inducible protein cinA
13_1_40cm_scaffold_1459_20
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

18705..19415
DNA (711bp) protein (237aa)
C-type lectin domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XMI4_9BACT
C-type lectin domain protein {ECO:0000313|EMBL:EEF59026.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Ped
13_1_40cm_scaffold_1459_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

19489..21114
DNA (1626bp) protein (542aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] Tax=GWC2_Rokubacteria_70_16_curated
Acetolactate synthase id=4736650 bin=GWC2_Methylomirabilis_70_16 species=Frankia sp. CN3 genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_1459_22
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21135..22109
DNA (975bp) protein (325aa)
NHL repeat-containing protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hypothetical protein SpalD1_28839 id=3396029 bin=GWC2_Syntrophus__56_31 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Syntrophus__56_31 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
13_1_40cm_scaffold_1459_23
unknown

Not on your lists

22106..22303
DNA (198bp) protein (66aa)

This feature has no annotations

13_1_40cm_scaffold_1459_24
bacterium YEK0313, Bacteria

Not on your lists

comp(22314..23258)
DNA (945bp) protein (315aa)
gluconolactonase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI000375A167
Gluconolactonase {ECO:0000313|EMBL:CEJ13397.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
putative gluconolactonase
13_1_40cm_scaffold_1459_25
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(23279..24679)
DNA (1401bp) protein (467aa)
AraC family transcriptional regulator id=14626524 bin=bin7_NC10_sister species=Methyloversatilis universalis genus=Methyloversatilis taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
AraC family transcriptional regulator Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
AraC family transcriptional regulator
13_1_40cm_scaffold_1459_26
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

24847..25860
DNA (1014bp) protein (338aa)
Luciferase-like monooxygenase id=2589433 bin=GWA2_Methylomirabilis_73_35 species=Halalkalicoccus jeotgali genus=Halalkalicoccus taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Luciferase-like monooxygenase Tax=GWA2_Rokubacteria_73_35_curated
luciferase-like protein
13_1_40cm_scaffold_1459_27
CG_CP02_01, CG_CP02, Bacteria

Not on your lists

comp(25861..26523)
DNA (663bp) protein (221aa)
Ribonuclease HI Tax=CG_CP02_01
13_1_40cm_scaffold_1459_28
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26528..27445)
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Actinomadura madurae LIID-AJ290 RepID=U2PR48_9ACTO
LysR family transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
putative LysR, transcriptional regulator
13_1_40cm_scaffold_1459_29
unknown

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27529..27816
DNA (288bp) protein (96aa)

This feature has no annotations

13_1_40cm_scaffold_1459_30
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

27813..28163
DNA (351bp) protein (117aa)
Putative uncharacterized protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IQA1_KORVE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF40949.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strai
Displaying items 1-30 of 33 in total

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