ggKbase home page

13_1_40cm_scaffold_2001

Search features with annotation key words

Displaying items 1-30 of 34 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2001_1
GWC2_Nitrospirae_57_13_curated, Nitrospirae, Bacteria

Not on your lists

1..453
DNA (453bp) protein (151aa)
Mg-chelatase subunit ChlD
Uncharacterized protein id=1821595 bin=GWD2_Nitrospirae-related_57_8 species=Glaciecola psychrophila genus=Glaciecola taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Nitrospirae-related_57_8 organism_group=Nitrospirae organism_desc=Many Proteobacteria hits
hypothetical protein Tax=GWC2_Nitrospirae_57_13_curated
13_1_40cm_scaffold_2001_2
R_NC10_66_22, NC10, Bacteria

Not on your lists

comp(611..1885)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DMD7_BRAJP
hypothetical protein; K02027 multiple sugar transport system substrate-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
sugar ABC transporter substrate-binding protein
13_1_40cm_scaffold_2001_3
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

2027..4663
DNA (2637bp) protein (879aa)
spermine synthase; K00797 spermidine synthase [EC:2.5.1.16] Tax=RBG_16_Armatimonadetes_67_12_curated
hypothetical protein id=14631506 bin=bin9_gal15 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=bin9_gal15 organism_group=GAL15
hypothetical protein
13_1_40cm_scaffold_2001_4

Not on your lists

4704..4907
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN10446.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
13_1_40cm_scaffold_2001_5
unknown

Not on your lists

5064..5411
DNA (348bp) protein (116aa)

This feature has no annotations

13_1_40cm_scaffold_2001_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

5472..6179
DNA (708bp) protein (236aa)
ABC-type proline/glycine betaine transport system, ATPase component n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y6B9_THIV6 id=5224893 bin=16ft_combo_ws3_JS1 species=Thiocystis violascens genus=Thiocystis taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter-like protein; K05847 osmoprotectant transport system ATP-binding protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter ATP-binding protein
13_1_40cm_scaffold_2001_7
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6181..7632
DNA (1452bp) protein (484aa)
Glycine betaine/L-proline ABC transporter permease and substrate-binding protein n=1 Tax=Myxococcus stipitatus (strain DSM 14675 / JCM 12634 / Mx s8) RepID=L7U2B6_MYXSD id=5224892 bin=16ft_combo_ws3_JS1 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
ABC transporter permease; K05846 osmoprotectant transport system permease protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
glycine/betaine ABC transporter substrate-binding protein
13_1_40cm_scaffold_2001_8
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(7481..8326)
DNA (846bp) protein (282aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
13_1_40cm_scaffold_2001_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(8323..9300)
DNA (978bp) protein (326aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
putative methyltransferase
methyltransferase id=14430828 bin=bin3_NC10 species=Conexibacter woesei genus=Conexibacter taxon_order=Solirubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin3_NC10 organism_group=NC10
13_1_40cm_scaffold_2001_10
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(9311..10618)
DNA (1308bp) protein (436aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
hypothetical protein id=14430829 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
13_1_40cm_scaffold_2001_11
RBG_16_Acidobacteria_70_10_curated, Acidobacteria, Bacteria

Not on your lists

10694..11551
DNA (858bp) protein (286aa)
Pirin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VUE9_9GAMM
Pirin-related protein Tax=RBG_16_Acidobacteria_70_10_curated
Pirin-related protein
13_1_40cm_scaffold_2001_12
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11563..12279
DNA (717bp) protein (239aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
13_1_40cm_scaffold_2001_13
CG_Cyano_02, Cyanobacteria, Bacteria

Not on your lists

12303..13043
DNA (741bp) protein (247aa)
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI0003802491
Methylase of polypeptide chain release factors Tax=CG_Cyano_02
methylase of polypeptide chain release factors
13_1_40cm_scaffold_2001_14
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

13064..13855
DNA (792bp) protein (264aa)
Alpha/beta hydrolase fold Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha/beta hydrolase fold id=2940473 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Alpha/beta hydrolase fold
13_1_40cm_scaffold_2001_15
Cellvibrio japonicus, Cellvibrio, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13842..16484)
DNA (2643bp) protein (881aa)
Putative uncharacterized protein n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PDS5_CELJU
Uncharacterized protein {ECO:0000313|EMBL:ACE85850.1}; TaxID=498211 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Cellvibrio.;" source="Cellvibrio japonicu
13_1_40cm_scaffold_2001_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(16515..17390)
DNA (876bp) protein (292aa)
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=2306543 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
thioesterase superfamily protein
13_1_40cm_scaffold_2001_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

17417..18907
DNA (1491bp) protein (497aa)
putative AMP-dependent synthetase and ligase Tax=GWA2_Rokubacteria_70_23_curated
Putative AMP-dependent synthetase and ligase id=3198385 bin=GWF2_Methylomirabilis_70_14 species=Burkholderia xenovorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative AMP-dependent synthetase and ligase
13_1_40cm_scaffold_2001_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

18904..20076
DNA (1173bp) protein (391aa)
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
Putative exported protein id=3198517 bin=GWF2_Methylomirabilis_70_14 species=Sphingopyxis sp. MC1 genus=Sphingopyxis taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_2001_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

20108..20521
DNA (414bp) protein (138aa)
Uncharacterized protein id=3198521 bin=GWF2_Methylomirabilis_70_14 species=Bordetella bronchiseptica genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K07068 Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
13_1_40cm_scaffold_2001_20
Thioploca ingrica, Thioploca, Thiotrichales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20537..21025
DNA (489bp) protein (163aa)
Putative cAMP-binding protein n=1 Tax=Methyloversatilis universalis FAM5 RepID=F5REZ3_9RHOO
cyclic nucleotide-binding protein
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:BAP57247.1}; TaxID=40754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Thiotrichaceae; Thioploca.;" source="Thioploca ingri
13_1_40cm_scaffold_2001_21
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

21048..21449
DNA (402bp) protein (134aa)
id=14626280 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_2001_22
Streptomyces sp. HCCB10043, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21575..22240
DNA (666bp) protein (222aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=1396518 species="Bacteria; Actinobacteria; Streptomycetales; Strep
lolD2; lipoprotein-releasing system ATP-binding protein LolD (EC:3.6.3.-)
Phosphonate ABC transporter n=2 Tax=Streptomyces RepID=D6AQM6_STRFL
13_1_40cm_scaffold_2001_23
Cyanothece sp. PCC 7822, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(22286..23014)
DNA (729bp) protein (243aa)
ABC transporter related protein n=1 Tax=Cyanothece sp. (strain PCC 7822) RepID=E0U9I4_CYAP2
ABC transporter-like protein
ABC transporter related protein {ECO:0000313|EMBL:ADN12676.1}; TaxID=497965 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. (strain PCC 782
13_1_40cm_scaffold_2001_24
Cylindrospermum stagnale, Cylindrospermum, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(23011..23793)
DNA (783bp) protein (261aa)
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family n=1 Tax=Cylindrospermum stagnale PCC 7417 RepID=K9X6Y5_9NOST
amino acid/amide ABC transporter ATP-binding protein 1, HAAT family
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family {ECO:0000313|EMBL:AFZ27864.1}; TaxID=56107 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Cylindrospermum.;" source="Cyl
13_1_40cm_scaffold_2001_25
Cyanothece sp. PCC 7425, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(23790..24734)
DNA (945bp) protein (315aa)
Inner-membrane translocator n=1 Tax=Cyanothece sp. (strain PCC 7425 / ATCC 29141) RepID=B8HN84_CYAP4
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACL47211.1}; Flags: Precursor;; TaxID=395961 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp.
13_1_40cm_scaffold_2001_26
Microcoleus sp. PCC 7113, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(24743..25693)
DNA (951bp) protein (317aa)
flagellin biosynthesis protein FlgM n=1 Tax=Chlorogloeopsis RepID=UPI0003151D68
amino acid ABC transporter
Amino acid/amide ABC transporter membrane protein 1, HAAT family {ECO:0000313|EMBL:AFZ18039.1}; Flags: Precursor;; TaxID=1173027 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriale
13_1_40cm_scaffold_2001_27
Calothrix sp. PCC 7507, Calothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(25715..26896)
DNA (1182bp) protein (394aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI000347834A
amino acid ABC transporter substrate-binding protein
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:AFY32446.1}; Flags: Precursor;; TaxID=99598 species="Bacteria; Cyanobacteria; Nostocales; Rivulariaceae; Calot
13_1_40cm_scaffold_2001_28
GWC2_Geobacteraceae_58_44_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27068..28624)
DNA (1557bp) protein (519aa)
acetolactate synthase catalytic subunit (EC:2.2.1.6)
hypothetical protein n=1 Tax=Candidatus Poribacteria sp. WGA-4E RepID=UPI000378A836
acetolactate synthase catalytic subunit Tax=GWC2_Geobacteraceae_58_44_curated
13_1_40cm_scaffold_2001_29
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28671..29702)
DNA (1032bp) protein (344aa)
Zinc-binding dehydrogenase family oxidoreductase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W938_9SPHN
Zinc-binding dehydrogenase family oxidoreductase {ECO:0000313|EMBL:ENY80178.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.
alcohol dehydrogenase
13_1_40cm_scaffold_2001_30
unknown

Not on your lists

comp(29750..29923)
DNA (174bp) protein (58aa)

This feature has no annotations

Displaying items 1-30 of 34 in total

View Taxonomy