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13_1_40cm_scaffold_2055

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_2055_1
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1069
DNA (1068bp) protein (356aa)
Simple sugar transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P1B4_AZOS1
simple sugar transport system permease protein
Simple sugar transport system permease protein {ECO:0000313|EMBL:BAI74443.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;"
13_1_40cm_scaffold_2055_2
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1066..1989
DNA (924bp) protein (308aa)
ABC transporter permease protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TJU4_TISMK
ABC transporter permease {ECO:0000313|EMBL:KJB93928.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella ae
ABC transporter permease
13_1_40cm_scaffold_2055_3
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2022..3452
DNA (1431bp) protein (477aa)
Putative ABC transporter n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z864_9BRAD
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EWY37376.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Ske
putative ABC transporter
13_1_40cm_scaffold_2055_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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3449..4912
DNA (1464bp) protein (488aa)
amidohydrolase; K12960 5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.31 3.5.4.28] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Amidohydrolase n=1 Tax=Roseobacter sp. GAI101 RepID=B7RGM7_9RHOB
amidohydrolase
13_1_40cm_scaffold_2055_5
CSP1_5_NC10, NC10, Bacteria

Not on your lists

comp(4909..5511)
DNA (603bp) protein (201aa)
ribosomal protein L11 methylase id=14430730 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Cyanobacteria tax=bin3_NC10 organism_group=NC10
ribosomal protein L11 methylase Tax=CSP1_5_NC10
hypothetical protein
13_1_40cm_scaffold_2055_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(5523..5939)
DNA (417bp) protein (139aa)
conserved protein of unknown function; putative thioesterase domain Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=4761802 bin=GWA2_Elusimicrobia_69_24 species=Thalassospira profundimaris genus=Thalassospira taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
13_1_40cm_scaffold_2055_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5936..6844)
DNA (909bp) protein (303aa)
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31); K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3-hydroxyisobutyrate dehydrogenase (EC:1.1.1.31)
2-hydroxy-3-oxopropionate reductase id=4472507 bin=GWA2_Methylomirabilis_73_35 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2055_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(6844..7335)
DNA (492bp) protein (164aa)
endoribonuclease L-PSP Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Endoribonuclease L-PSP id=4472509 bin=GWA2_Methylomirabilis_73_35 species=RBG9 genus=RBG9 taxon_order=RBG9 taxon_class=RBG9 phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation inhibitor
13_1_40cm_scaffold_2055_9
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7506..8450
DNA (945bp) protein (315aa)
Nucleotidyl transferase Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative Nucleotidyl transferase id=4590844 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Nucleotidyl transferase
13_1_40cm_scaffold_2055_10
Myxococcus fulvus, Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8491..8874
DNA (384bp) protein (128aa)
Sensory box histidine kinase/response regulator n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CPS3_MYXFH
sensory box histidine kinase/response regulator
Sensory box histidine kinase/response regulator {ECO:0000313|EMBL:AEI62946.1}; TaxID=483219 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxoc
13_1_40cm_scaffold_2055_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8920..9702
DNA (783bp) protein (261aa)
short-chain dehydrogenase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Short-chain dehydrogenase/reductase SDR id=4472514 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
short chain dehydrogenase
13_1_40cm_scaffold_2055_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9747..10838
DNA (1092bp) protein (364aa)
3'-5' exonuclease; K03684 ribonuclease D [EC:3.1.13.5] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
3'-5' exonuclease id=4472621 bin=GWA2_Methylomirabilis_73_35 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
3'-5' exonuclease
13_1_40cm_scaffold_2055_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

10852..11298
DNA (447bp) protein (149aa)
CoA-binding domain protein id=4472625 bin=GWA2_Methylomirabilis_73_35 species=Marinithermus hydrothermalis genus=Marinithermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
CoA-binding domain-containing protein; K06929 Tax=GWA2_Rokubacteria_73_35_curated
CoA-binding protein
13_1_40cm_scaffold_2055_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

11299..12978
DNA (1680bp) protein (560aa)
ABC transporter Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
ABC transporter related protein id=4472628 bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter
13_1_40cm_scaffold_2055_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(12956..13609)
DNA (654bp) protein (218aa)
spermidine synthase-like protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Spermidine synthase id=4472637 bin=GWA2_Methylomirabilis_73_35 species=Gallaecimonas xiamenensis genus=Gallaecimonas taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_2055_16
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(13864..14631)
DNA (768bp) protein (256aa)
3-hydroxyacyl-CoA dehydrogenase type II (EC:1.1.1.35)
hsd17b10, abad, camr, erab, hadh2, hcd2, hsd10, mhbd, mrpp2, mrx17, mrx31, mrxs10, schad, sdr5c1; hydroxysteroid (17-beta) dehydrogenase 10; K08683 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxy-2-methyl
putative short chain dehydrogenase id=4478784 bin=GWF2_Methylomirabilis_70_14 species=Pseudonocardia sp. P1 genus=Pseudonocardia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Displaying 16 items

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