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13_1_40cm_scaffold_834

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_scaffold_834_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(3..125)
DNA (123bp) protein (41aa)
xseA; exodeoxyribonuclease VII large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
13_1_40cm_scaffold_834_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(148..627)
DNA (480bp) protein (160aa)
Methenyltetrahydrofolate cyclohydrolase (EC:3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] Tax=GWA2_Rokubacteria_73_35_
Bifunctional protein FolD id=3975803 bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase
13_1_40cm_scaffold_834_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(912..1502)
DNA (591bp) protein (197aa)
metallophosphoesterase; K09769 hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Metallophosphoesterase id=3975805 bin=GWA2_Methylomirabilis_73_35 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_834_4
unknown

Not on your lists

comp(1502..1621)
DNA (120bp) protein (40aa)

This feature has no annotations

13_1_40cm_scaffold_834_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(1627..2466)
DNA (840bp) protein (280aa)
ymdA; 2',3'-cyclic-nucleotide 2'-phosphodiesterase (EC:3.1.4.16); K06950 uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Ribonuclease Y id=4039892 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_scaffold_834_6
unknown

Not on your lists

2492..3088
DNA (597bp) protein (199aa)

This feature has no annotations

13_1_40cm_scaffold_834_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3497..4276
DNA (780bp) protein (260aa)
Enoyl-CoA hydratase (EC:4.2.1.17) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative Enoyl-CoA hydratase n=1 Tax=Streptomyces viridochromogenes Tue57 RepID=L8PP32_STRVR
cytochrome p450 family protein
13_1_40cm_scaffold_834_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4289..4576)
DNA (288bp) protein (96aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Putative uncharacterized protein id=4039893 bin=GWC2_Methylomirabilis_70_24 species=Plesiocystis pacifica genus=Plesiocystis taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_834_9
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(4569..4763)
DNA (195bp) protein (65aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_scaffold_834_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4763..5242)
DNA (480bp) protein (160aa)
phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20); K01890 phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
pheT; phenylalanyl-tRNA synthetase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit id=4039897 bin=GWC2_Methylomirabilis_70_24 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_834_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6337..7155
DNA (819bp) protein (273aa)
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
13_1_40cm_scaffold_834_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


comp(7023..7724)
DNA (702bp) protein (234aa)
pheS; phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=GWA2_Rokubacteria_70_23_curated
Phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] id=14627867 bin=bin7_NC10_sister species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
pheS; phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
13_1_40cm_scaffold_834_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(7981..8337)
DNA (357bp) protein (119aa)
rplT; 50S ribosomal protein L20 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L20 id=3919662 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L20
13_1_40cm_scaffold_834_14
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists


comp(8353..8550)
DNA (198bp) protein (66aa)
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
50S ribosomal protein L35 id=3919663 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Megamonas taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpmI; 50S ribosomal protein L35
13_1_40cm_scaffold_834_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(8569..9033)
DNA (465bp) protein (155aa)
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Translation initiation factor IF-3 id=3919664 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
translation initiation factor IF-3
13_1_40cm_scaffold_834_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9168..10961)
DNA (1794bp) protein (598aa)
thrS; threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=GWA2_Rokubacteria_70_23_curated
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase id=4825373 bin=GWC2_Methylomirabilis_70_24 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_834_trna_1
unknown

Not on your lists

comp(10987..11058)
DNA (72bp)
transferRNA
13_1_40cm_scaffold_834_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11129..11578)
DNA (450bp) protein (150aa)
OmpA/MotB protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
TonB family protein id=4825345 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
13_1_40cm_scaffold_834_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(12172..13188)
DNA (1017bp) protein (339aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54); K03856 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54) id=14628036 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
aroG-2; 3-deoxy-7-phosphoheptulonate synthase
13_1_40cm_scaffold_834_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(13398..14195)
DNA (798bp) protein (266aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Uncharacterized protein id=3779673 bin=GWA2_Methylomirabilis_73_35 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_scaffold_834_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(14162..15577)
DNA (1416bp) protein (472aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=14625475 bin=bin7_NC10_sister species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
amidase
13_1_40cm_scaffold_834_21
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

15602..16894
DNA (1293bp) protein (431aa)
Uncharacterized protein Tax=GWA2_Rokubacteria_73_35_curated
Uncharacterized protein id=3779679 bin=GWA2_Methylomirabilis_73_35 species=Zea mays genus=Zea taxon_order=Poales taxon_class=Liliopsida phylum=Streptophyta tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_scaffold_834_22
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(16904..18133)
DNA (1230bp) protein (410aa)
cyclic nucleotide-binding protein Tax=GWA2_Rokubacteria_73_35_curated
cyclic nucleotide-binding protein id=14625478 bin=bin7_NC10_sister species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
13_1_40cm_scaffold_834_23
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(18130..18630)
DNA (501bp) protein (167aa)
Crp/Fnr family transcriptional regulator id=14625479 bin=bin7_NC10_sister species=Nocardioides sp. CF8 genus=Nocardioides taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
Crp/Fnr family transcriptional regulator Tax=CSP1_6_Rokubacteria
Crp/Fnr family transcriptional regulator
13_1_40cm_scaffold_834_24
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(18764..18982)
DNA (219bp) protein (73aa)
hypothetical protein id=3779689 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_scaffold_834_25
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

19076..19522
DNA (447bp) protein (149aa)
P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein id=4646444 bin=GWA2_Methylomirabilis_73_35 species=Chamaesiphon minutus genus=Chamaesiphon taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein Tax=GWA2_Rokubacteria_73_35_curated
hypothetical protein
13_1_40cm_scaffold_834_26
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

19646..21175
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003608F0B
Acriflavin resistance protein {ECO:0000313|EMBL:EEF57494.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pe
acriflavin resistance protein
Displaying 27 items

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