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13_1_40cm_4_scaffold_2457

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Displaying 28 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_2457_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1..1152)
DNA (1152bp) protein (384aa)
major facilitator transporter Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
major facilitator transporter id=14626825 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Thaumarchaeota tax=bin7_NC10_sister organism_group=NC10
major facilitator superfamily transporter
13_1_40cm_4_scaffold_2457_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

1178..1465
DNA (288bp) protein (96aa)
hypothetical protein id=3564597 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
13_1_40cm_4_scaffold_2457_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1415..1834)
DNA (420bp) protein (140aa)
id=4956250 Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
hypothetical protein id=3564594 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2457_4
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(1834..2757)
DNA (924bp) protein (308aa)
NAD-dependent epimerase/dehydratase; K00329 NADH dehydrogenase [EC:1.6.5.3]; K00356 NADH dehydrogenase [EC:1.6.99.3] Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
NAD-dependent epimerase/dehydratase id=3837105 bin=GWC2_Methylomirabilis_70_24 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
NAD-dependent epimerase/dehydratase
13_1_40cm_4_scaffold_2457_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

2887..5142
DNA (2256bp) protein (752aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Uncharacterized conserved protein UCP016719 id=3564591 bin=GWA2_Methylomirabilis_73_35 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
13_1_40cm_4_scaffold_2457_6
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(5407..6369)
DNA (963bp) protein (321aa)
putative xylanase/chitin deacetylase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Putative xylanase/chitin deacetylase id=3837102 bin=GWC2_Methylomirabilis_70_24 species=Solitalea canadensis genus=Solitalea taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative xylanase/chitin deacetylase
13_1_40cm_4_scaffold_2457_7
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6366..7643)
DNA (1278bp) protein (426aa)
hypothetical protein Tax=GWA2_Rokubacteria_73_35_curated
Putative uncharacterized protein id=4493806 bin=GWC2_Methylomirabilis_70_16 species=Azoarcus sp. KH32C genus=Azoarcus taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
13_1_40cm_4_scaffold_2457_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8133..8978
DNA (846bp) protein (282aa)
alpha/beta hydrolase fold protein Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Alpha/beta hydrolase fold id=3564582 bin=GWA2_Methylomirabilis_73_35 species=Burkholderia cenocepacia genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hydrolase
13_1_40cm_4_scaffold_2457_9
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8975..9652
DNA (678bp) protein (226aa)
Putative uncharacterized protein id=4177889 bin=GWC2_Methylomirabilis_70_16 species=Bradyrhizobium sp. genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein Tax=GWC2_Rokubacteria_70_16_curated
phospholipase/Carboxylesterase family protein
13_1_40cm_4_scaffold_2457_10
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

9601..10503
DNA (903bp) protein (301aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Desulfovibrio sp. U5L RepID=I2PWK7_9DELT
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:CDM65472.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylali
EmrB/QacA family drug resistance transporter
13_1_40cm_4_scaffold_2457_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(10594..13311)
DNA (2718bp) protein (906aa)
fdhA; formate dehydrogenase, alpha subunit (fdhA2) (EC:1.2.1.2) Tax=GWA2_Rokubacteria_73_35_curated
fdhA; formate dehydrogenase, alpha subunit (fdhA2) (EC:1.2.1.2)
Formate dehydrogenase, alpha subunit (FdhA2) id=4493797 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
13_1_40cm_4_scaffold_2457_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(13319..15367)
DNA (2049bp) protein (683aa)
dehydrogenase (EC:1.6.99.5) Tax=GWA2_Rokubacteria_73_35_curated
dehydrogenase (EC:1.6.99.5)
Putative dehydrogenase, similar to gamma (5') and beta (3') subunits of formate dehydrogenase and to nuoE and nuoF of NADH dehydrogenase (FdhB2/C2) id=3708969 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2457_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(15426..16574)
DNA (1149bp) protein (383aa)
homoserine O-acetyltransferase; K00641 homoserine O-acetyltransferase [EC:2.3.1.31] Tax=GWA2_Rokubacteria_73_35_curated
homoserine o-acetyltransferase (EC:2.3.1.31)
Homoserine O-acetyltransferase id=3564579 bin=GWA2_Methylomirabilis_73_35 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2457_14
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16664..17932
DNA (1269bp) protein (423aa)
beta-lactamase n=1 Tax=Variovorax paradoxus RepID=UPI00037DF14D
Beta-lactamase class C and other penicillin binding protein
Cupriavidus basilensis strain 4G11 chromosome main, complete sequence {ECO:0000313|EMBL:AJG20189.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiacea
13_1_40cm_4_scaffold_2457_15
unknown

Not on your lists

comp(17936..18082)
DNA (147bp) protein (49aa)

This feature has no annotations

13_1_40cm_4_scaffold_2457_16
unknown

Not on your lists

comp(18087..18293)
DNA (207bp) protein (69aa)

This feature has no annotations

13_1_40cm_4_scaffold_2457_17
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(18327..19043)
DNA (717bp) protein (239aa)
ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Demethylmenaquinone methyltransferase id=3564574 bin=GWA2_Methylomirabilis_73_35 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ubiquinone/menaquinone biosynthesis methyltransferase
13_1_40cm_4_scaffold_2457_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(19037..19885)
DNA (849bp) protein (283aa)
4-hydroxybenzoate polyprenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-] Tax=GWA2_Rokubacteria_70_23_curated
4-hydroxybenzoate polyprenyltransferase id=4493686 bin=GWC2_Methylomirabilis_70_16 species=Meiothermus ruber genus=Meiothermus taxon_order=Thermales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
4-hydroxybenzoate polyprenyltransferase
13_1_40cm_4_scaffold_2457_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(19896..21413)
DNA (1518bp) protein (506aa)
ubiD1; 3-octaprenyl-4-hydroxybenzoate carboxylyase UbiD (EC:4.1.1.-) Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
3-octaprenyl-4-hydroxybenzoate carboxylyase UbiD id=3564567 bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
UbiD family decarboxylase
13_1_40cm_4_scaffold_2457_20
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(21418..21915)
DNA (498bp) protein (166aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
Putative uncharacterized protein id=4731536 bin=GWC2_Methylomirabilis_70_24 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
13_1_40cm_4_scaffold_2457_21
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21971..22351)
DNA (381bp) protein (127aa)
histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000313|EMBL:ACG74251.1}; EC=2.7.13.3 {ECO:0000313|EMBL:ACG74251.1};; TaxID=447217 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaerom
Histidine kinase n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UKB3_ANASK
13_1_40cm_4_scaffold_2457_22
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22385..26431
DNA (4047bp) protein (1349aa)
GAF sensor hybrid histidine kinase (EC:2.7.13.3)
multi-sensor signal transduction histidine kinase Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Multi-sensor signal transduction histidine kinase id=3564564 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
13_1_40cm_4_scaffold_2457_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

26472..26744
DNA (273bp) protein (91aa)
histone family protein DNA-binding protein; K03530 DNA-binding protein HU-beta Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
Histone family protein DNA-binding protein id=4493677 bin=GWC2_Methylomirabilis_70_16 species=Desulfurispirillum indicum genus=Desulfurispirillum taxon_order=Chrysiogenales taxon_class=Chrysiogenetes phylum=Chrysiogenetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hupB; DNA-binding protein HU-beta
13_1_40cm_4_scaffold_2457_trna_1
unknown

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26791..26861
DNA (71bp)
transferRNA
13_1_40cm_4_scaffold_2457_trna_2
unknown

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26882..26954
DNA (73bp)
transferRNA
13_1_40cm_4_scaffold_2457_24
BJP_IG2069_Syntrophobacterales_46_30, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28034..28228
DNA (195bp) protein (65aa)
hypothetical protein id=24471009 bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Hyphomicrobium denitrificans genus=Hyphomicrobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
Tax=BJP_IG2069_Syntrophobacterales_46_30
13_1_40cm_4_scaffold_2457_25
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28598..29665
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1AL19_PELPD
hypothetical protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
hypothetical protein
13_1_40cm_4_scaffold_2457_26
unknown

Not on your lists

comp(31199..31423)
DNA (225bp) protein (75aa)

This feature has no annotations

Displaying 28 items

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