ggKbase home page

RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(54..533)
DNA (480bp) protein (160aa)
Cytidyltransferase-related domain protein id=4941209 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cytidyltransferase-related domain-containing protein Tax=GWC2_Rokubacteria_70_16_curated
cytidyltransferase-related domain-containing protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(517..1527)
DNA (1011bp) protein (337aa)
ADP-heptose synthase/ D-glycero-beta-D-manno-heptose 7-phosphate kinase id=4941208 bin=GWC2_Methylomirabilis_70_16 species=Myxococcus stipitatus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
D-beta-D-heptose 7-phosphate kinase Tax=GWC2_Rokubacteria_70_16_curated
D-beta-D-heptose 7-phosphate kinase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(1527..2084)
DNA (558bp) protein (186aa)
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-); K03273 D-glycero-D-manno-heptose 1,7-bisphosphate phosphatase [EC:3.1.3.82 3.1.3.83] Tax=GWC2_Rokubacteria_70_16
histidinol-phosphate phosphatase family protein/HAD-superfamily hydrolase (EC:3.1.3.-)
D,D-heptose 1,7-bisphosphate phosphatase id=4143314 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2142..3257)
DNA (1116bp) protein (372aa)
group 1 glycosyl transferase; K02844 UDP-glucose:(heptosyl)LPS alpha-1,3-glucosyltransferase [EC:2.4.1.-] Tax=GWA2_Rokubacteria_73_35_curated
Glycosyl transferase, group 1 id=2909784 bin=GWC2_Methylomirabilis_70_24 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
group 1 glycosyl transferase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3254..4384)
DNA (1131bp) protein (377aa)
Glycosyl transferase group 1 id=4000026 bin=GWF2_Methylomirabilis_70_14 species=Methanofollis liminatans genus=Methanofollis taxon_order=Methanomicrobiales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
glycosyltransferase Tax=GWA2_Rokubacteria_70_23_curated
Glycosyl transferase, group 1
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4381..5517)
DNA (1137bp) protein (379aa)
Glycosyl transferase group 1 id=2909548 bin=GWC2_Methylomirabilis_70_24 species=Burkholderia phytofirmans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
group 1 glycosyl transferase Tax=GWA2_Rokubacteria_70_23_curated
glycosyltransferase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_7
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5514..6644)
DNA (1131bp) protein (377aa)
Glycosyl transferase group 1 id=4000028 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase Tax=GWA2_Rokubacteria_70_23_curated
group 1 glycosyl transferase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(6641..7720)
DNA (1080bp) protein (360aa)
group 1 glycosyl transferase Tax=GWA2_Rokubacteria_70_23_curated
Glycosyl transferase group 1 id=2909546 bin=GWC2_Methylomirabilis_70_24 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
group 1 glycosyl transferase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(7717..8721)
DNA (1005bp) protein (335aa)
ADP-heptose--LPS heptosyltransferase II (EC:2.-.-.-) Tax=GWA2_Rokubacteria_70_23_curated
ADP-heptose--LPS heptosyltransferase II (Modular protein) id=2909545 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
lipopolysaccharide heptosyltransferase II
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8722..10461)
DNA (1740bp) protein (580aa)
tetraacyldisaccharide 4'-kinase (EC:2.7.1.130); K00912 tetraacyldisaccharide 4'-kinase [EC:2.7.1.130] Tax=GWA2_Rokubacteria_70_23_curated
lpxK; Tetraacyldisaccharide 4'-kinase (Lipid A 4'-kinase) (EC:2.7.1.130)
Tetraacyldisaccharide 4'-kinase id=4000032 bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10454..11761)
DNA (1308bp) protein (436aa)
waaA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.4.-.-); K02527 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15] Tax=GWA2_Rokubacteria_70_23_curated
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
3-deoxy-D-manno-octulosonic-acid transferase id=4000033 bin=GWF2_Methylomirabilis_70_14 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(11758..12381)
DNA (624bp) protein (208aa)
Uncharacterized protein id=2909537 bin=GWC2_Methylomirabilis_70_24 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein; K09778 hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_13
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12408..13568)
DNA (1161bp) protein (387aa)
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182) Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182) id=14627189 bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
lpxB; Lipid-A-disaccharide synthase (EC:2.4.1.182)
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13555..14373)
DNA (819bp) protein (273aa)
Putative uncharacterized protein id=4000072 bin=GWF2_Methylomirabilis_70_14 species=Desulfovibrio africanus genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein; K09949 hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14352..15383)
DNA (1032bp) protein (344aa)
Oxidoreductase, NAD-binding domain protein id=4000074 bin=GWF2_Methylomirabilis_70_14 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
oxidoreductase Tax=GWA2_Rokubacteria_70_23_curated
oxidoreductase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_16
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(15380..16204)
DNA (825bp) protein (275aa)
lpxA; acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase (EC:2.3.1.129); K00677 UDP-N-acetylglucosamine acyltransferase [EC:2.3.1.129] Tax=GWA2_Rokubacteria_70_23_curated
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase id=4000076 bin=GWF2_Methylomirabilis_70_14 species=Megasphaera micronuciformis genus=Megasphaera taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
acyl-ACP-UDP-N-acetylglucosamine O-acyltransferase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(16201..17241)
DNA (1041bp) protein (347aa)
UDP-3-O-acylglucosamine N-acyltransferase id=2875198 bin=GWC2_Methylomirabilis_70_16 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase Tax=GWC2_Rokubacteria_70_16_curated
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_18
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(17242..17808)
DNA (567bp) protein (189aa)
Putative Outer membrane chaperone Skp (OmpH) id=2875195 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
outer membrane chaperone Skp; K06142 outer membrane protein Tax=GWC2_Rokubacteria_70_16_curated
membrane protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(17827..20106)
DNA (2280bp) protein (760aa)
Outer membrane protein assembly factor BamA id=2875192 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Surface antigen (D15) Tax=GWC2_Rokubacteria_70_16_curated
Surface antigen (D15)
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(20150..22597)
DNA (2448bp) protein (816aa)
ATPase AAA-2 domain protein id=2875189 bin=GWC2_Methylomirabilis_70_16 species=Thermosediminibacter oceani genus=Thermosediminibacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ATPase AAA; K03696 ATP-dependent Clp protease ATP-binding subunit ClpC Tax=GWC2_Rokubacteria_70_16_curated
ATPase AAA
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(22739..23422)
DNA (684bp) protein (228aa)
ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-] Tax=GWC2_Rokubacteria_70_16_curated
ABC transporter related id=2875184 bin=GWC2_Methylomirabilis_70_16 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_16289_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(23415..23666)
DNA (252bp) protein (84aa)
Lipoprotein releasing system, transmembrane protein, LolC/E family id=2875180 bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family Tax=GWC2_Rokubacteria_70_16_curated
lolC; Lipoprotein releasing system, transmembrane protein, LolC/E family
Displaying 22 items

View Taxonomy