ggKbase home page

RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_1
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..597)
DNA (597bp) protein (199aa)
carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002629048
isocitrate lyase and phosphorylmutase
Isocitrate lyase and phosphorylmutase {ECO:0000313|EMBL:AIJ23420.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis meth
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_2
S_OP1_64_32, KB1, Bacteria

Not on your lists

comp(896..2488)
DNA (1593bp) protein (531aa)
Extracellular solute-binding protein family 5 Tax=S_OP1_64_32
Extracellular solute-binding protein family 5 id=4092058 bin=GWC2_Chloroflexi_73_18 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
ddpA; Putative D,D-dipeptide-binding periplasmic protein DdpA
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_3
Thermomicrobium roseum, Thermomicrobium, Thermomicrobiales, Thermomicrobia, Chloroflexi, Bacteria

Not on your lists

comp(2485..3426)
DNA (942bp) protein (314aa)
Inner membrane ABC transporter permease protein yddQ n=1 Tax=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) RepID=B9L1W0_THERP
inner membrane ABC transporter permease YddQ
Inner membrane ABC transporter permease protein yddQ {ECO:0000313|EMBL:ACM04969.1}; TaxID=309801 species="Bacteria; Chloroflexi; Thermomicrobiales; Thermomicrobiaceae; Thermomicrobium.;" source="Therm
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_4
Pseudomonas brassicacearum, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3423..4427)
DNA (1005bp) protein (335aa)
Oligopeptide/dipeptide ABC transporter, permease protein n=2 Tax=Pseudomonas RepID=I4KLF5_PSEFL
dipeptide ABC transporter permease
Putative dipeptide ABC transporter permease component {ECO:0000313|EMBL:AEA69210.1}; TaxID=994484 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_5
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4438..6162)
DNA (1725bp) protein (575aa)
5-oxoprolinase (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
hydantoinase n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003725A71
hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_6
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6173..8215)
DNA (2043bp) protein (681aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037BD7D8
hyuA2; N-methylhydantoinase A (Hydantoin utilization protein A) Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
agaF; AgaF protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_7
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8219..9469)
DNA (1251bp) protein (417aa)
selA; selenocysteine synthase [seryl-trnaser selenium transferase] protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
Pyridoxal phosphate enzyme id=4735168 bin=GWC2_Methylomirabilis_70_16 species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
mTH; hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_8
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9466..10632)
DNA (1167bp) protein (389aa)
2-aminoadipate aminotransferase apoenzyme n=1 Tax=uncultured archaeon A07HR67 RepID=V4ZN22_9ARCH
multiple substrate aminotransferase Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13b_curated
GntR family transcriptional regulator
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_9
RBG_16_Deltaproteobacteria_47_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10637..12199)
DNA (1563bp) protein (521aa)
extracellular solute-binding protein Tax=RBG_16_Deltaproteobacteria_47_11_curated
Extracellular solute-binding protein family 5 id=4092058 bin=GWC2_Chloroflexi_73_18 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
family 5 extracellular solute-binding protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_10
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12196..13908)
DNA (1713bp) protein (571aa)
5-oxoprolinase (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14] Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
Hydantoinase/oxoprolinase n=3 Tax=Clostridium RepID=E7GIE4_CLOSY
hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_11
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13905..15944)
DNA (2040bp) protein (680aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00037BD7D8
N-methylhydantoinase A (ATP-hydrolyzing) {ECO:0000313|EMBL:EDP61261.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
agaF; AgaF protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_12
S_OP1_64_32, KB1, Bacteria

Not on your lists

comp(15958..16851)
DNA (894bp) protein (298aa)
Binding-protein-dependent transport systems inner membrane component Tax=S_OP1_64_32
Dipeptide transport system permease protein DppC
Binding-protein-dependent transport systems inner membrane component id=4092052 bin=GWC2_Chloroflexi_73_18 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_13
Serratia odorifera, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16851..17867)
DNA (1017bp) protein (339aa)
Putative D,D-dipeptide transport system permease protein DdpB n=1 Tax=Serratia odorifera DSM 4582 RepID=D4E668_SEROD
Putative D,D-dipeptide transport system permease protein DdpB {ECO:0000313|EMBL:EFE94797.1}; TaxID=667129 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae;
Dipeptide transport system permease protein DppB
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_14
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17869..19131)
DNA (1263bp) protein (421aa)
glycine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Vulcanisaeta distributa (strain DSM 14429 / JCM 11212 / NBRC 100878 / IC-017) RepID=E1QTB2_VULDI
Serine hydroxymethyltransferase {ECO:0000313|EMBL:KGM31217.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilin
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_15
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19128..19442)
DNA (315bp) protein (105aa)
Uncharacterized protein id=4735176 bin=GWC2_Methylomirabilis_70_16 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFV12217.1}; TaxID=1089553 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetog
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_16
CG_OP9-01, Atribacteria, Bacteria

Not on your lists

comp(19439..20797)
DNA (1359bp) protein (453aa)
Uncharacterized protein id=4735175 bin=GWC2_Methylomirabilis_70_16 species=Kineosphaera limosa genus=Kineosphaera taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Protein of unknown function (DUF1446) Tax=CG_OP9-01
Protein of unknown function (DUF1446)
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_17
Pseudomonas sp. St29, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20794..21582)
DNA (789bp) protein (263aa)
Putative uncharacterized protein id=4735174 bin=GWC2_Methylomirabilis_70_16 species=Corynebacterium variabile genus=Corynebacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:BAQ81510.1}; TaxID=1500687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pse
hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_18
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21572..22219)
DNA (648bp) protein (216aa)
Putative glutamine ABC transporter permease protein GlnM id=4735173 bin=GWC2_Methylomirabilis_70_16 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glnM; glutamine ABC transporter permease GlnM
Putative glutamine ABC transporter permease protein GlnM {ECO:0000313|EMBL:AFL55220.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/E
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_19
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22281..22937)
DNA (657bp) protein (219aa)
Polar amino acid ABC transporter, inner membrane subunit id=4735172 bin=GWC2_Methylomirabilis_70_16 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
L-cystine transport system permease protein tcyB
L-cystine transport system permease protein tcyB {ECO:0000313|EMBL:CCE98678.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer g
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(22944..23777)
DNA (834bp) protein (278aa)
Glutamine-binding protein GlnH id=4735171 bin=GWC2_Methylomirabilis_70_16 species=Sinorhizobium fredii genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
glnH; glutamine-binding protein GlnH Tax=GWA2_Rokubacteria_70_23_curated
glnH; Membrane-bound lytic murein transglycosylase F Murein lyase F; Flags: Precursor
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_21
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23796..25112)
DNA (1317bp) protein (439aa)
2,2-dialkylglycine decarboxylase (EC:4.1.1.64)
4-aminobutyrate aminotransferase class-III id=4735170 bin=GWC2_Methylomirabilis_70_16 species=Saccharopolyspora erythraea genus=Saccharopolyspora taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Uncharacterized protein {ECO:0000313|EMBL:ETW95870.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_22
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25130..26392)
DNA (1263bp) protein (421aa)
Pyridoxal phosphate enzyme id=4735168 bin=GWC2_Methylomirabilis_70_16 species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
selA; selenocysteine synthase [seryl-trnaser selenium transferase] protein Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
selA; selenocysteine synthase [seryl-trnaser seleniumtransferase] protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_23
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26376..27170)
DNA (795bp) protein (265aa)
Transcriptional regulator id=4735166 bin=GWC2_Methylomirabilis_70_16 species=Rhizobium sp. CF142 genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Transcriptional regulator {ECO:0000313|EMBL:EJJ31487.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" so
putative GntR family transcriptional regulator
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(27381..29009)
DNA (1629bp) protein (543aa)
AMP-dependent synthetase and ligase; K12507 acyl-CoA synthetase [EC:6.2.1.-] Tax=GWA2_Rokubacteria_70_23_curated
AMP-dependent synthetase and ligase id=4669387 bin=GWF2_Methylomirabilis_70_14 species=Burkholderia phytofirmans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
AMP-dependent synthetase and ligase
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_25
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(29006..29536)
DNA (531bp) protein (177aa)
Uncharacterized protein id=4669389 bin=GWF2_Methylomirabilis_70_14 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein Tax=GWA2_Rokubacteria_70_23_curated
hypothetical protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(29533..30363)
DNA (831bp) protein (277aa)
enoyl-CoA hydratase (EC:4.2.1.17); K01692 enoyl-CoA hydratase [EC:4.2.1.17] Tax=GWA2_Rokubacteria_70_23_curated
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase/isomerase id=4735160 bin=GWC2_Methylomirabilis_70_16 species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_27
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(30363..31310)
DNA (948bp) protein (316aa)
Luciferase family protein id=4735158 bin=GWC2_Methylomirabilis_70_16 species=Frankia sp. genus=Frankia taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
luciferase family protein Tax=GWA2_Rokubacteria_70_23_curated
luciferase family protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_28
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(31316..32023)
DNA (708bp) protein (236aa)
Branched chain amino acid ABC transporter ATP-binding protein id=4735156 bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
branched chain amino acid ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_70_23_curated
branched chain amino acid ABC transporter ATP-binding protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_29
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(32016..32744)
DNA (729bp) protein (243aa)
ABC transporter related id=4669397 bin=GWF2_Methylomirabilis_70_14 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein Tax=GWA2_Rokubacteria_70_23_curated
ABC transporter-like protein
RIFCSPLOWO2_12_FULL_Methylomirabilis_71_19_rifcsplowo2_12_scaffold_1220_30
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(32779..33792)
DNA (1014bp) protein (338aa)
Amino acid/amide ABC transporter membrane protein 2, HAAT family id=4735152 bin=GWC2_Methylomirabilis_70_16 species=Burkholderia xenovorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
branched chain amino acid ABC transporter inner membrane protein; K01998 branched-chain amino acid transport system permease protein Tax=GWA2_Rokubacteria_70_23_curated
branched-chain amino acid transport system / permease component family protein
Displaying items 1-30 of 36 in total

View Taxonomy