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PLM4_32_b1_sep16_scaffold_1160

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_1160_1
Tolypothrix bouteillei, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(2..484)
DNA (483bp) protein (161aa)
Putative transcriptional regulator Tax=Chamaesiphon minutus PCC 6605 RepID=K9UN63_9CHRO
DNA-binding protein {ECO:0000313|EMBL:KIE08885.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix bouteillei VB521301.;"
putative transcriptional regulator
PLM4_32_b1_sep16_scaffold_1160_2
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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739..1068
DNA (330bp) protein (110aa)
Phenylacetic acid degradation-related protein Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q135S5_RHOPS
phenylacetic acid degradation-like protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_1160_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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1065..2027
DNA (963bp) protein (321aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding bin=GWA2_Methylomirabilis_73_35 species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
D-isomer specific 2-hydroxyacid dehydrogenase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_1160_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(2048..2413)
DNA (366bp) protein (122aa)
Histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
two component sigma54 specific Fis family transcriptional regulator
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1160_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

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2441..3382
DNA (942bp) protein (314aa)
Threonine dehydratase Tax=Singulisphaera acidiphila RepID=L0DI97_SINAD
threonine dehydratase
Threonine dehydratase {ECO:0000313|EMBL:AGA28538.1}; species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PLM4_32_b1_sep16_scaffold_1160_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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3379..3651
DNA (273bp) protein (91aa)
Uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_1160_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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comp(3622..5280)
DNA (1659bp) protein (553aa)
AMP-forming acyl-CoA synthetase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-] bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
AMP-binding domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_1160_8
R_Nitrospirae_62_14, Nitrospirae, Bacteria

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5334..5933
DNA (600bp) protein (200aa)
ATP binding protein, putative Tax=Ricinus communis RepID=B9RLA3_RICCO
OmpA/MotB
Tax=RIFCSPLOWO2_02_FULL_Nitrospirae_62_14_curated
PLM4_32_b1_sep16_scaffold_1160_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(5942..6109)
DNA (168bp) protein (56aa)
id=3227643 bin=GWC2_Methylomirabilis_70_24 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1160_10
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(6106..6906)
DNA (801bp) protein (267aa)
Methyltransferase type 11 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PUF1_KRIFD
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADB29469.1}; species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
PLM4_32_b1_sep16_scaffold_1160_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(7034..7417)
DNA (384bp) protein (128aa)
Histidine kinase bin=GWA2_Methylomirabilis_73_35 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
histidine kinase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_32_b1_sep16_scaffold_1160_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7419..8624)
DNA (1206bp) protein (402aa)
aminotransferase (EC:2.6.1.-)
Transcriptional regulator with HTH domain and aminotransferase domain bin=GWC2_Methylomirabilis_70_16 species=Thermanaerovibrio velox genus=Thermanaerovibrio taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1160_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(8632..9822)
DNA (1191bp) protein (397aa)
L-carnitine dehydratase/bile acid-inducible protein F bin=GWC2_Methylomirabilis_70_16 species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
L-carnitine dehydratase/bile acid-inducible protein F
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1160_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(9880..10635)
DNA (756bp) protein (252aa)
Beta-lactamase family protein bin=GWC2_Methylomirabilis_70_24 species=Thiomicrospira crunogena genus=Thiomicrospira taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1160_15
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(10638..11375)
DNA (738bp) protein (246aa)
Iron (Metal) dependent repressor, DtxR family bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
iron dependent repressor
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_1160_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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11414..12601
DNA (1188bp) protein (396aa)
fadE; acyl-CoA dehydrogenase fadE (EC:1.3.99.-)
Acyl-CoA dehydrogenase bin=GWF2_Methylomirabilis_70_14 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_1160_17
unknown

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12650..13072
DNA (423bp) protein (141aa)

This feature has no annotations

Displaying 17 items

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