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PLM4_32_b1_sep16_scaffold_2134

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_32_b1_sep16_scaffold_2134_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2..496)
DNA (495bp) protein (165aa)
Ribulose-phosphate 3-epimerase bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rpe; ribulose-phosphate 3-epimerase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(543..1901)
DNA (1359bp) protein (453aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(1898..2785)
DNA (888bp) protein (296aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(2877..3398)
DNA (522bp) protein (174aa)
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase bin=GWC2_Methylomirabilis_70_16 species=Alkalilimnicola ehrlichii genus=Alkalilimnicola taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(3427..5193)
DNA (1767bp) protein (589aa)
Primosomal protein N bin=GWC2_Methylomirabilis_70_24 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
primosomal protein N
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5290..5988)
DNA (699bp) protein (233aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
uracil-DNA glycosylase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(5993..7228)
DNA (1236bp) protein (412aa)
coaBC; coenzyme A biosynthesis bifunctional protein coaBC (EC:4.1.1.36 6.3.2.5)
Coenzyme A biosynthesis bifunctional protein CoaBC bin=GWC2_Methylomirabilis_70_24 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2134_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(7378..7590)
DNA (213bp) protein (71aa)
DNA-directed RNA polymerase subunit omega bin=GWC2_Methylomirabilis_70_16 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DNA-directed RNA polymerase subunit omega
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2134_9
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

comp(7590..8126)
DNA (537bp) protein (179aa)
gmk; guanylate kinase (EC:2.7.4.8) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
gmk; Guanylate kinase (EC:2.7.4.8)
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM4_32_b1_sep16_scaffold_2134_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8163..8984)
DNA (822bp) protein (274aa)
YicC-like domain-containing protein bin=GWF2_Methylomirabilis_70_14 species=Thermaerobacter marianensis genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9249..10343
DNA (1095bp) protein (365aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10354..11142
DNA (789bp) protein (263aa)
ABC transporter ATP-binding protein bin=GWC2_Methylomirabilis_70_24 species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ABC transporter ATP-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

11258..12073
DNA (816bp) protein (272aa)
hypothetical protein; K02050 NitT/TauT family transport system permease protein bin=bin7_NC10_sister species=Bradyrhizobium japonicum genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(12087..12713)
DNA (627bp) protein (209aa)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM4_32_b1_sep16_scaffold_2134_15
R_OD1_58_14, Parcubacteria, Bacteria

Not on your lists

12790..13194
DNA (405bp) protein (135aa)
Putative uncharacterized protein bin=GWA1_ZB2_49_26 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
hypothetical protein
Tax=RIFCSPLOWO2_01_FULL_OD1_58_14_curated
PLM4_32_b1_sep16_scaffold_2134_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(13191..13721)
DNA (531bp) protein (177aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase bin=GWC2_Methylomirabilis_70_16 species=Acidimicrobium ferrooxidans genus=Acidimicrobium taxon_order=Acidimicrobiales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM4_32_b1_sep16_scaffold_2134_17
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13721..14335)
DNA (615bp) protein (205aa)
uridine monophosphate synthetase (EC:4.1.1.23 2.4.2.10)
Orotate phosphoribosyltransferase bin=GWF2_Methylomirabilis_70_14 species=uncultured Chloroflexi bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14332..15057)
DNA (726bp) protein (242aa)
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase bin=GWF2_Methylomirabilis_70_14 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_32_b1_sep16_scaffold_2134_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(15044..16111)
DNA (1068bp) protein (356aa)
carB; carbamoyl phosphate synthase, large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
Displaying 19 items

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