ggKbase home page

PLM4_65_coex_sep16_scaffold_2675

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_2675_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..315)
DNA (315bp) protein (105aa)
Cupin 2, conserved barrel Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q218L9_RHOPB
cupin 2 barrel domain-containing protein
Cupin 2, conserved barrel {ECO:0000313|EMBL:ABD87167.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
PLM4_65_coex_sep16_scaffold_2675_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2119..3237)
DNA (1119bp) protein (373aa)
Putative RNA polymerase, sigma-24 subunit, ECF subfamily bin=GWA2_Methylomirabilis_73_35 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative RNA polymerase sigma factor containing a TPR repeat domain
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_2675_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3247..3594)
DNA (348bp) protein (116aa)
YCII-related protein bin=GWA2_Methylomirabilis_73_35 species=Planctomyces limnophilus genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_2675_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3680..4696)
DNA (1017bp) protein (339aa)
Extracellular solute-binding protein family 1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A431_STAND
family 1 extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ADH87851.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
PLM4_65_coex_sep16_scaffold_2675_5
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4705..5013)
DNA (309bp) protein (103aa)
Alpha/beta hydrolase fold protein Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A430_STAND
Alpha/beta hydrolase {ECO:0000313|EMBL:EWY41637.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
alpha/beta hydrolase fold protein
PLM4_65_coex_sep16_scaffold_2675_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5048..6124)
DNA (1077bp) protein (359aa)
ABC transporter related protein Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A429_STAND
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADH87849.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
PLM4_65_coex_sep16_scaffold_2675_7
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6129..7775)
DNA (1647bp) protein (549aa)
Binding-protein-dependent transport systems inner membrane component Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A428_STAND
binding-protein-dependent transporters inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADH87848.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
PLM4_65_coex_sep16_scaffold_2675_8
GWA2_Bdellovibrionales_49_15_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

comp(7859..8395)
DNA (537bp) protein (179aa)
Putative uncharacterized protein bin=GWA2__Bacteriovorax-rel_49_15 species=Bradyrhizobium sp. genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2__Bacteriovorax-rel_49_15 organism_group=Deltaproteobacteria
N-acetyltransferase GCN5
Tax=GWA2_Bdellovibrionales_49_15_curated
PLM4_65_coex_sep16_scaffold_2675_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(8486..8911)
DNA (426bp) protein (142aa)
Putative pyridoxamine 5'-phosphate oxidase-related protein Tax=Actinoplanes friuliensis DSM 7358 RepID=U5VRK8_9ACTO
putative pyridoxamine 5'-phosphate oxidase-related protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_coex_sep16_scaffold_2675_10
Frankia sp. EUN1f, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9574..10734)
DNA (1161bp) protein (387aa)
Glycosyltransferase, MGT family Tax=Frankia sp. EUN1f RepID=D3D977_9ACTO
Glycosyltransferase, MGT family {ECO:0000313|EMBL:EFC80537.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. EUN1f.;"
MGT family glycosyltransferase
PLM4_65_coex_sep16_scaffold_2675_11
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10804..11196)
DNA (393bp) protein (131aa)
Uncharacterized protein Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6THI4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EKQ50645.1}; species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium sp. Maddingley MBC34.;"
2'-5' RNA ligase
PLM4_65_coex_sep16_scaffold_2675_12
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11612..13111)
DNA (1500bp) protein (500aa)
Metal-dependent hydrolase Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HNA1_9BRAD
Amidohydrolase {ECO:0000313|EMBL:ETR76145.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
amidohydrolase 2
PLM4_65_coex_sep16_scaffold_2675_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(13121..13891)
DNA (771bp) protein (257aa)
Bll0351 protein bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Bradyrhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
putative Zn-dependent hydrolase
Tax=GWA2_Rokubacteria_70_23_curated
PLM4_65_coex_sep16_scaffold_2675_14
unknown

Not on your lists

comp(13881..13946)
DNA (66bp) protein (22aa)

This feature has no annotations

Displaying 14 items

View Taxonomy