ggKbase home page

PLM4_65_coex_sep16_scaffold_5450

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_5450_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2..166)
DNA (165bp) protein (55aa)
2-phospho-L-lactate transferase bin=GWF2_Methylomirabilis_70_14 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
LPPG:FO 2-phospho-L-lactate transferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_5450_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(213..827)
DNA (615bp) protein (205aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_5450_3
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

comp(814..1107)
DNA (294bp) protein (98aa)
Transcriptional dual regulator HU-beta bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hupB; transcriptional dual regulator HU-beta
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM4_65_coex_sep16_scaffold_5450_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1177..2442)
DNA (1266bp) protein (422aa)
cofH; 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase (EC:2.5.1.-)
FO synthase subunit 2 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_5450_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(2420..3562)
DNA (1143bp) protein (381aa)
FO synthase subunit 1 bin=GWA2_Methylomirabilis_73_35 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cofG; FO synthase subunit 1
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_5450_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3559..4662)
DNA (1104bp) protein (368aa)
Coenzyme f420-dependent n5,n10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases bin=GWA2_Methylomirabilis_73_35 species=uncultured Chloroflexi bacterium HF0200_06I16 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
luciferase family protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_5450_7
unknown

Not on your lists

comp(4778..4963)
DNA (186bp) protein (62aa)

This feature has no annotations

PLM4_65_coex_sep16_scaffold_5450_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5032..6075
DNA (1044bp) protein (348aa)
Major facilitator superfamily MFS_1 bin=GWA2_Methylomirabilis_73_35 species=Dethiobacter alkaliphilus genus=Dethiobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
major facilitator superfamily transporter
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_5450_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

6072..6386
DNA (315bp) protein (105aa)
thioesterase; phenylacetic acid degradation protein; ComA bin=bin7_NC10_sister species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=CSP1_6_Rokubacteria
PLM4_65_coex_sep16_scaffold_5450_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6401..7840
DNA (1440bp) protein (480aa)
Histidine kinase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
integral membrane sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_5450_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

7837..8244
DNA (408bp) protein (136aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_5450_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

8241..9746
DNA (1506bp) protein (502aa)
Signal transduction histidine kinase, nitrogen specific, NtrB bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
signal transduction histidine kinase, nitrogen specific, NtrB
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_5450_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9743..11122
DNA (1380bp) protein (460aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWA2_Methylomirabilis_73_35 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, transcriptional regulator, Fis family
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_5450_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11585..11923
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II 1 bin=GWA2_Methylomirabilis_73_35 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
nitrogen regulatory protein P-II
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_5450_15
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

11939..12244
DNA (306bp) protein (102aa)
Ammonium transport protein (Amt family) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ammonium transporter
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 15 items

View Taxonomy