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PLM4_65_coex_sep16_scaffold_13515

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Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM4_65_coex_sep16_scaffold_13515_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(3..434)
DNA (432bp) protein (144aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_13515_2
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists


comp(453..833)
DNA (381bp) protein (127aa)
50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
50S ribosomal protein L19
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_13515_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(866..1615)
DNA (750bp) protein (250aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (Guanine-N1)-methyltransferase bin=GWA2_Methylomirabilis_73_35 species=Thermaerobacter subterraneus genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_13515_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(1627..2115)
DNA (489bp) protein (163aa)
16S rRNA-processing protein RimM bin=GWA2_Methylomirabilis_73_35 species=unidentified genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
16S rRNA processing protein RimM
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_13515_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists


comp(2142..2390)
DNA (249bp) protein (83aa)
30S ribosomal protein S16 bin=GWC2_Methylomirabilis_70_16 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
rpsP; 30S ribosomal protein S16
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM4_65_coex_sep16_scaffold_13515_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


comp(2395..3747)
DNA (1353bp) protein (451aa)
Signal recognition particle protein bin=GWC2_Methylomirabilis_70_16 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
signal recognition particle subunit FFH/SRP54 (srp54)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_13515_7
Pythium ultimum, Pythium, Pythiales, Eukaryota

Not on your lists

comp(4126..4572)
DNA (447bp) protein (149aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Uncharacterized protein Tax=Pythium ultimum RepID=K3WRY2_PYTUL
Uncharacterized protein {ECO:0000313|EnsemblProtists:PYU1_T007726}; species="Eukaryota; Stramenopiles; Oomycetes; Pythiales; Pythiaceae; Pythium.;" source="Pythium ultimum DAOM BR144.;"
PLM4_65_coex_sep16_scaffold_13515_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(4578..4928)
DNA (351bp) protein (117aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
SAM-dependent methyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM4_65_coex_sep16_scaffold_13515_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(4871..5782)
DNA (912bp) protein (304aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Sun; tRNA and rRNA cytosine-C5-methylases
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_13515_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(5779..6558)
DNA (780bp) protein (260aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase bin=GWA2_Methylomirabilis_73_35 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM4_65_coex_sep16_scaffold_13515_11
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

comp(6701..6823)
DNA (123bp) protein (41aa)
peptide deformylase bin=bin7_NC10_sister species=Thioflavicoccus mobilis genus=Thioflavicoccus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 11 items

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