ggKbase home page

PLM1_100_coex_sep16_scaffold_139

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_139_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

2..322
DNA (321bp) protein (107aa)
Putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (APGAM) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phophosphoglycerate mutase AP superfamily
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

355..1596
DNA (1242bp) protein (414aa)
Peptidase M23B bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
peptidase M23
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(2236..4194)
DNA (1959bp) protein (653aa)
Uncharacterised monovalent cation:proton antiporter, CPA2 family Tax=Candidatus Nitrospira defluvii RepID=D8PBM9_9BACT
ybaL; monovalent cation:proton antiporter
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_139_4
unknown

Not on your lists

4275..4700
DNA (426bp) protein (142aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_139_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

4780..6180
DNA (1401bp) protein (467aa)
Phosphoesterase RecJ domain protein bin=GWC2_Methylomirabilis_70_16 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
phosphoesterase domain-containing protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

6177..6482
DNA (306bp) protein (102aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Desulforudis audaxviator genus=Candidatus Desulforudis taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

6491..7837
DNA (1347bp) protein (449aa)
Magnesium transporter bin=GWC2_Methylomirabilis_70_16 species=Herpetosiphon aurantiacus genus=Herpetosiphon taxon_order=Herpetosiphonales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
magnesium transporter
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_8
Chroococcidiopsis thermalis, Chroococcidiopsis, Pleurocapsales, Cyanobacteria, Bacteria

Not on your lists

8181..10745
DNA (2565bp) protein (855aa)
Glycosyl transferase family 2 Tax=Chroococcidiopsis thermalis PCC 7203 RepID=K9TZ50_9CYAN
family 2 glycosyl transferase
Glycosyl transferase family 2 {ECO:0000313|EMBL:AFY87840.1}; species="Bacteria; Cyanobacteria; Pleurocapsales; Chroococcidiopsis.;" source="Chroococcidiopsis thermalis PCC 7203.;"
PLM1_100_coex_sep16_scaffold_139_9
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

10742..11899
DNA (1158bp) protein (386aa)
Putative uncharacterized protein Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=A0LP69_SYNFM
Uncharacterized protein {ECO:0000313|EMBL:KIJ79146.1}; species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_139_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

12053..12682
DNA (630bp) protein (210aa)
pmtA; phosphatidylethanolamine N-methyltransferase (EC:2.1.1.17)
Similar to phosphatidylethanolamine N-methyltransferase bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_139_11
unknown

Not on your lists

comp(12721..13140)
DNA (420bp) protein (140aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_139_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

13268..14215
DNA (948bp) protein (316aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(14190..15077)
DNA (888bp) protein (296aa)
Phosphonate ABC transporter, periplasmic phosphonate-binding protein bin=GWF2_Methylomirabilis_70_14 species=Labrenzia alexandrii genus=Labrenzia taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphonate ABC transporter periplasmic phosphonate-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_139_14
R_Rokubacteria_69_13, Rokubacteria, Bacteria

Not on your lists

15506..15898
DNA (393bp) protein (131aa)
hypothetical protein bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM1_100_coex_sep16_scaffold_139_15
unknown

Not on your lists

comp(16326..16529)
DNA (204bp) protein (68aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_139_16
unknown

Not on your lists

16697..17464
DNA (768bp) protein (256aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_139_17
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(17851..19329)
DNA (1479bp) protein (493aa)
Response regulator bin=GWC2_Methylomirabilis_70_16 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
AtoC; response regulator
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(19427..20902)
DNA (1476bp) protein (492aa)
Periplasmic trypsin-like serine protease lipoprotein DegQ bin=GWC2_Methylomirabilis_70_24 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
degQ; periplasmic trypsin-like serine protease lipoprotein DegQ
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_139_19
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(20948..22282)
DNA (1335bp) protein (445aa)
tRNA(Ile)-lysidine synthase bin=GWC2_Methylomirabilis_70_16 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
tRNA(Ile)-lysidine synthetase
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(22323..23003)
DNA (681bp) protein (227aa)
Molybdopterin synthase subunit MoaD / molybdopterin synthase subunit MoaE bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
molybdopterin converting factor-like protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(23032..23358)
DNA (327bp) protein (109aa)
Iron-binding protein IscA (Iron-sulfur cluster assembly protein) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
iscA; iron-binding protein IscA (iron-sulfur cluster assembly protein)
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(23454..24170)
DNA (717bp) protein (239aa)
Oxidoreductase, short chain dehydrogenase/reductase family bin=GWC2_Methylomirabilis_70_16 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
short chain dehydrogenase
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_23
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(24167..24730)
DNA (564bp) protein (188aa)
folE; GTP cyclohydrolase I (EC:3.5.4.16) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
folE; GTP cyclohydrolase I (EC:3.5.4.16)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_139_24
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(24727..25161)
DNA (435bp) protein (145aa)
6-carboxy-5,6,7,8-tetrahydropterin synthase bin=GWF2_Methylomirabilis_70_14 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
putative 6-pyruvoyl tetrahydropterin synthase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_139_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(25158..25559)
DNA (402bp) protein (134aa)
putative 6-pyruvoyl tetrahydropterin synthase; K01737 6-pyruvoyl tetrahydrobiopterin synthase [EC:4.2.3.12] bin=bin7_NC10_sister species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=bin7_NC10_sister organism_group=NC10
putative 6-pyruvoyl tetrahydropterin synthase
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_139_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(25567..26451)
DNA (885bp) protein (295aa)
Glycosyl transferase, group 1 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Roseiflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
group 1 glycosyl transferase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_139_27
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(26665..27450)
DNA (786bp) protein (262aa)
Enoyl-CoA hydratase/isomerase bin=GWC2_Methylomirabilis_70_16 species=Mycobacterium tusciae genus=Mycobacterium taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
enoyl-CoA hydratase/isomerase family protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_139_28
unknown

Not on your lists

27668..27811
DNA (144bp) protein (48aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_139_29
unknown

Not on your lists

comp(28356..28538)
DNA (183bp) protein (61aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_139_trna_1
unknown

Not on your lists

comp(28702..28774)
DNA (73bp)
transferRNA Met
Displaying items 1-30 of 39 in total

View Taxonomy