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PLM1_100_coex_sep16_scaffold_159

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_159_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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2..1291
DNA (1290bp) protein (430aa)
Twin-arginine translocation pathway signal (Fragment) bin=GWF2_Methylomirabilis_70_14 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
livG; branched-chain amino acid ABC transporter periplasmic protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_159_2
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

1300..3012
DNA (1713bp) protein (571aa)
Urea ABC transporter, permease protein UrtB bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
urea ABC transporter permease
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_159_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2999..4147
DNA (1149bp) protein (383aa)
Urea ABC transporter, permease protein UrtC bin=GWF2_Methylomirabilis_70_14 species=Desulfotomaculum carboxydivorans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
urea ABC transporter permease UrtC
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_159_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4148..4936
DNA (789bp) protein (263aa)
urea ABC transporter ATP-binding protein UrtD (EC:3.6.3.28)
Urea ABC transporter, ATP-binding protein UrtD bin=GWF2_Methylomirabilis_70_14 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_159_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4929..5633
DNA (705bp) protein (235aa)
Urea ABC transporter, ATP-binding protein UrtE bin=GWF2_Methylomirabilis_70_14 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
urea ABC transporter ATP-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_159_6
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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5643..5945
DNA (303bp) protein (101aa)
urease subunit gamma (EC:3.5.1.5); K01430 urease subunit gamma [EC:3.5.1.5] bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Aeromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
urease subunit gamma
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_100_coex_sep16_scaffold_159_7
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

6178..6549
DNA (372bp) protein (124aa)
urease subunit beta (EC:3.5.1.5); K01429 urease subunit beta [EC:3.5.1.5] bin=bin7_NC10_sister species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
urease subunit beta (EC:3.5.1.5)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_100_coex_sep16_scaffold_159_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6546..8261
DNA (1716bp) protein (572aa)
Urease subunit alpha bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ureC; urease subunit alpha
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_159_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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8484..8984
DNA (501bp) protein (167aa)
urease accessory protein UreE bin=GWF2_Methylomirabilis_70_14 species=SAR324 cluster bacterium JCVI-SC AAA005 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ureE; urease accessory protein UreE
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_159_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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8977..9666
DNA (690bp) protein (230aa)
Urease accessory protein UreF bin=GWF2_Methylomirabilis_70_14 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
urease accessory protein ureF
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_159_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9663..10280
DNA (618bp) protein (206aa)
Urease accessory protein UreG bin=GWC2_Methylomirabilis_70_16 species=Synechococcus sp. genus=Synechococcus taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ureG; urease accessory protein UreG
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_159_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10357..11169
DNA (813bp) protein (271aa)
Urease accessory protein UreD bin=GWF2_Methylomirabilis_70_14 species=Dechloromonas aromatica genus=Dechloromonas taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ureD urease accessory family protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_159_13
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11295..12890
DNA (1596bp) protein (532aa)
ABC-type dipeptide transport system, periplasmic component Tax=Bradyrhizobium sp. YR681 RepID=J2WMK9_9BRAD
Dipeptide-binding ABC transporter periplasmic substrate-binding component {ECO:0000313|EMBL:KIL97146.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_159_14
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12903..13916
DNA (1014bp) protein (338aa)
Binding-protein-dependent transport systems inner membrane component Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VKC6_RHOPX
Dipeptide transport system permease protein DppB {ECO:0000313|EMBL:KIL97147.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
binding-protein-dependent transporter inner membrane component
PLM1_100_coex_sep16_scaffold_159_15
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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13913..14758
DNA (846bp) protein (282aa)
Dipeptide transport system permease Tax=Oceanibaculum indicum P24 RepID=K2K347_9PROT
Dipeptide transport system permease {ECO:0000313|EMBL:EKE77314.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
dipeptide ABC transporter permease DppC
PLM1_100_coex_sep16_scaffold_159_16
RLO_Entotheonella_69_37, Entotheonella, Bacteria

Not on your lists

14755..15726
DNA (972bp) protein (324aa)
hypothetical protein Tax=Prochlorothrix hollandica RepID=UPI00034DE57F
ddpD; dipeptide ABC transporter ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Entotheonella_69_37_curated
PLM1_100_coex_sep16_scaffold_159_17
Magnetospirillum magnetotacticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15723..16676
DNA (954bp) protein (318aa)
ABC transporter ATP-binding protein Tax=Salinisphaera shabanensis E1L3A RepID=F7Q8S6_9GAMM
Oligopeptide transport ATP-binding protein OppF {ECO:0000313|EMBL:KIL97150.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum magnetotacticum MS-1.;"
dppF; dipeptide ABC transporter ATP-binding protein
PLM1_100_coex_sep16_scaffold_159_18
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16669..18471
DNA (1803bp) protein (601aa)
Aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A Tax=Azospirillum sp. (strain B510) RepID=D3P2N1_AZOS1
gatA; aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A
Aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A {ECO:0000313|EMBL:BAI75051.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
PLM1_100_coex_sep16_scaffold_159_19
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

18464..18658
DNA (195bp) protein (65aa)
Uncharacterized protein Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VIB5_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ07232.1}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 7112.;"
PLM1_100_coex_sep16_scaffold_159_20
[Oscillatoria] sp. PCC 6506, Kamptonema, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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18655..20064
DNA (1410bp) protein (470aa)
Amidase {ECO:0000313|EMBL:CBN54627.1}; EC=3.5.1.4 {ECO:0000313|EMBL:CBN54627.1};; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Kamptonema.;" source="[Oscillatoria] sp. PCC 6506.;"
Amidase Tax=Oscillatoria RepID=D8FW87_9CYAN
amidohydrolase, AtzE family
PLM1_100_coex_sep16_scaffold_159_21
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20064..20447
DNA (384bp) protein (128aa)
Uncharacterized protein Tax=Azospirillum brasilense Sp245 RepID=G8AYU1_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:EWY37386.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_159_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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20564..20854
DNA (291bp) protein (97aa)
Putative Nitrogen assimilation transcription regulatory protein (NtrC)(Synonyms:glnT, glnG) bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Nitrogen assimilation transcription regulatory protein (ntrC)(synonyms:glnT, glnG)
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_159_23
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

21490..21921
DNA (432bp) protein (144aa)
Putative uncharacterized protein bin=GWF2_Methylomirabilis_70_14 species=marine gamma proteobacterium HTCC2148 genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_159_24
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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22034..22726
DNA (693bp) protein (231aa)
phoB; response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
phoB; response regulator in two-component regulatory system with PhoR (or CreC), regulation of Pi uptake (OmpR family)
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_159_25
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

22723..24540
DNA (1818bp) protein (606aa)
Sensor protein yycG (EC:2.7.13.3) bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin7_NC10_sister organism_group=NC10
Sensor protein yycG (EC:2.7.13.3)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_159_26
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

24689..25483
DNA (795bp) protein (265aa)
Alpha/beta hydrolase fold protein Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SIJ0_RHOMR
Alpha/beta hydrolase {ECO:0000313|EMBL:KIC94784.1}; species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
alpha/beta hydrolase fold protein
PLM1_100_coex_sep16_scaffold_159_27
RBG_13_RIF08_66_14_curated, RIF8, Bacteria

Not on your lists

25480..27069
DNA (1590bp) protein (530aa)
hypothetical protein Tax=Hymenobacter aerophilus RepID=UPI00037258B8
GH3 auxin-responsive promoter
Tax=RBG_13_RIF08_66_14_curated
PLM1_100_coex_sep16_scaffold_159_28
Thermosynechococcus sp. NK55a, Thermosynechococcus, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(27077..29152)
DNA (2076bp) protein (692aa)
ppk; polyphosphate kinase Ppk (EC:2.7.4.1)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Thermosynechococcus.;" source="Thermosynechococcus sp. NK55a.;"
Polyphosphate kinase Tax=Holophaga foetida DSM 6591 RepID=H1NY48_9BACT
PLM1_100_coex_sep16_scaffold_159_29
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

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29380..30474
DNA (1095bp) protein (365aa)
Conserved hypothetical secreted protein Tax=Azoarcus sp. (strain BH72) RepID=A1K1L6_AZOSB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM1_100_coex_sep16_scaffold_159_30
unknown

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30610..30741
DNA (132bp) protein (44aa)

This feature has no annotations

Displaying 30 items

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