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PLM1_100_coex_sep16_scaffold_254

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_254_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..205)
DNA (204bp) protein (68aa)
bifunctional haloalkane dehalogenase/tRNA-specific adenosine deaminase
bifunctional haloalkane dehalogenase/tRNA-specific adenosine deaminase bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
PLM1_100_coex_sep16_scaffold_254_trna_3
unknown

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comp(292..365)
DNA (74bp)
transferRNA Arg
PLM1_100_coex_sep16_scaffold_254_trna_2
unknown

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comp(372..462)
DNA (91bp)
transferRNA Ser
PLM1_100_coex_sep16_scaffold_254_2
Desulfovibrio sp. X2, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

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564..2297
DNA (1734bp) protein (578aa)
ABC transporter domain-containing protein Tax=Desulfovibrio sp. X2 RepID=S7U4A5_9DELT
ABC transporter domain-containing protein {ECO:0000313|EMBL:EPR44281.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. X2.;"
ATP-binding cassette transporter
PLM1_100_coex_sep16_scaffold_254_trna_1
unknown

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comp(2311..2397)
DNA (87bp)
transferRNA Ser
PLM1_100_coex_sep16_scaffold_254_3
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(2410..3720)
DNA (1311bp) protein (437aa)
serS; seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase bin=GWC2_Methylomirabilis_70_16 species=Synergistes sp. 3_1_syn1 genus=Synergistes taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_254_4
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(3821..6265)
DNA (2445bp) protein (815aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_254_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(6284..8659)
DNA (2376bp) protein (792aa)
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] bin=bin7_NC10_sister species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DNA gyrase subunit B
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_254_6
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(8659..9750)
DNA (1092bp) protein (364aa)
DNA replication and repair protein RecF bin=GWF2_Methylomirabilis_70_14 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA replication and repair protein RecF
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_254_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(9775..10869)
DNA (1095bp) protein (365aa)
dnaN; DNA polymerase III subunit beta (EC:2.7.7.7)
DNA polymerase III subunit beta bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_254_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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comp(11037..12347)
DNA (1311bp) protein (437aa)
Chromosomal replication initiator protein DnaA bin=GWC2_Methylomirabilis_70_16 species=uncultured Acidobacteria bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
dnaA; chromosomal replication initiator protein dnaA
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_254_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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12689..12823
DNA (135bp) protein (45aa)
50S ribosomal protein L34 bin=GWA2_Methylomirabilis_73_35 species=Deinococcus maricopensis genus=Deinococcus taxon_order=Deinococcales taxon_class=Deinococci phylum=Deinococcus-Thermus tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
50S ribosomal protein L34
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_254_10
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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12850..13209
DNA (360bp) protein (120aa)
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5] bin=bin7_NC10_sister species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
ribonuclease P protein component
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_254_11
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

13439..15187
DNA (1749bp) protein (583aa)
hypothetical protein; K03217 preprotein translocase subunit YidC bin=bin7_NC10_sister species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_254_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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15220..15825
DNA (606bp) protein (202aa)
Ribosomal RNA small subunit methyltransferase G bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
methyltransferase GidB
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_254_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

15908..16669
DNA (762bp) protein (254aa)
Chromosome partitioning ATPase Soj bin=GWC2_Methylomirabilis_70_16 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 16 items

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