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PLM1_100_coex_sep16_scaffold_381

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_381_1
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

3..401
DNA (399bp) protein (133aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_381_2
Hyalangium minutum, Hyalangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(358..2247)
DNA (1890bp) protein (630aa)
UPF0313 protein STAUR_2893 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q08XF0_STIAD
UPF0313 protein DB31_0773 {ECO:0000256|HAMAP-Rule:MF_01251}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Hyalangium.;" source="Hyalangium minutum.;"
radical sam domain-containing protein
PLM1_100_coex_sep16_scaffold_381_3
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2256..3800)
DNA (1545bp) protein (515aa)
AMP-dependent synthetase and ligase Tax=Frankia sp. (strain EuI1c) RepID=E3J899_FRASU
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ADP83292.1}; species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
PLM1_100_coex_sep16_scaffold_381_4
R_Nitrospirae_66_17, Nitrospirae, Bacteria

Not on your lists

3967..4521
DNA (555bp) protein (185aa)
Uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Sulfuricella denitrificans genus=Sulfuricella taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
YaeQ family protein
Tax=RIFCSPHIGHO2_01_FULL_Nitrospirae_66_17_curated
PLM1_100_coex_sep16_scaffold_381_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(4518..4964)
DNA (447bp) protein (149aa)
UPF0178 protein Sama_3557 Tax=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) RepID=Y3557_SHEAM
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_381_6
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4976..5299)
DNA (324bp) protein (108aa)
Uncharacterized protein Tax=Pseudomonas alcaligenes NBRC 14159 RepID=U3AYN2_PSEAC
Uncharacterized protein {ECO:0000313|EMBL:GAN45018.1}; species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_381_7
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5360..5836
DNA (477bp) protein (159aa)
hypothetical protein bin=bin3_NC10 species=unknown genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
PLM1_100_coex_sep16_scaffold_381_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(5858..6571)
DNA (714bp) protein (238aa)
id=4426892 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_381_9
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6700..9009)
DNA (2310bp) protein (770aa)
Copper-translocating P-type ATPase Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=E3FW53_STIAD
copper-translocating p-type ATPase
Copper-translocating P-type ATPase {ECO:0000313|EMBL:ADO74774.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
PLM1_100_coex_sep16_scaffold_381_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(9006..10664)
DNA (1659bp) protein (553aa)
cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase (EC:1.8.1.9)
Cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q02A98_SOLUE
Cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase {ECO:0000313|EMBL:ABJ82028.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM1_100_coex_sep16_scaffold_381_11
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

10757..12277
DNA (1521bp) protein (507aa)
Na+/H+ antiporter Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FC95_CONWI
Na+/H+ antiporter
Na+/H+ antiporter {ECO:0000313|EMBL:ADB53390.1}; species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
PLM1_100_coex_sep16_scaffold_381_12
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12281..13159)
DNA (879bp) protein (293aa)
Citrate (Pro-3S)-lyase Tax=Cupriavidus basilensis OR16 RepID=H1S0W4_9BURK
Citrate (Pro-3S)-lyase {ECO:0000313|EMBL:EHP43780.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
citrate (Pro-3S)-lyase
PLM1_100_coex_sep16_scaffold_381_13
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

comp(13177..14403)
DNA (1227bp) protein (409aa)
formyl-CoA transferase (EC:2.8.3.16)
Formyl-CoA transferase {ECO:0000313|EMBL:ABJ84069.1}; EC=2.8.3.16 {ECO:0000313|EMBL:ABJ84069.1};; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
Formyl-CoA transferase Tax=Solibacter usitatus (strain Ellin6076) RepID=Q022N1_SOLUE
PLM1_100_coex_sep16_scaffold_381_14
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

comp(14468..14707)
DNA (240bp) protein (80aa)
hypothetical protein bin=bin7_NC10_sister species=Laribacter hongkongensis genus=Laribacter taxon_order=Neisseriales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_100_coex_sep16_scaffold_381_15
unknown

Not on your lists

comp(14807..14935)
DNA (129bp) protein (43aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_381_16
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14932..15753)
DNA (822bp) protein (274aa)
Alpha/beta hydrolase fold protein Tax=Geobacter uraniireducens (strain Rf4) RepID=A5G738_GEOUR
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ABQ27606.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM1_100_coex_sep16_scaffold_381_17
unknown

Not on your lists

15933..16283
DNA (351bp) protein (117aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_381_18
unknown

Not on your lists

16291..16641
DNA (351bp) protein (117aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_381_19
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(16661..19177)
DNA (2517bp) protein (839aa)
Histidine kinase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Chloroflexus taxon_order=Chloroflexales taxon_class=Chloroflexi phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_381_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

19586..19894
DNA (309bp) protein (103aa)
10 kDa chaperonin bin=GWC2_Methylomirabilis_70_16 species=uncultured Desulfobacterium sp. genus=Desulfobacterium taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
groS; chaperone Hsp10 (GroES), part of GroE chaperone system
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_381_21
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

19941..21563
DNA (1623bp) protein (541aa)
60 kDa chaperonin bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
groL; 60 kDa chaperonin (Protein Cpn60) (groEL protein)
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_381_22
unknown

Not on your lists

21786..21971
DNA (186bp) protein (62aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_381_23
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21926..22396)
DNA (471bp) protein (157aa)
Uncharacterized protein Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ECN3_RUNSL
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
PLM1_100_coex_sep16_scaffold_381_24
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22428..23681)
DNA (1254bp) protein (418aa)
hypothetical protein Tax=Arhodomonas aquaeolei RepID=UPI00037D7937
cytosine deaminase
Cytosine deaminase {ECO:0000313|EMBL:AIB16177.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
PLM1_100_coex_sep16_scaffold_381_25
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23805..23975
DNA (171bp) protein (57aa)
ferritin Tax=Methylohalobius crimeensis RepID=UPI0003B5E026
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAL62060.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
Displaying 25 items

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