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PLM1_100_coex_sep16_scaffold_384

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_384_1
Mycobacterium mageritense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(2..616)
DNA (615bp) protein (205aa)
Alpha/beta hydrolase fold protein Tax=Mycobacterium fortuitum subsp. fortuitum DSM 46621 RepID=K0V252_MYCFO
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase {ECO:0000313|EMBL:CDO20242.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium mageritense.;"
alpha/beta hydrolase
PLM1_100_coex_sep16_scaffold_384_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(643..1392)
DNA (750bp) protein (250aa)
High-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F) bin=GWC2_Methylomirabilis_70_16 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
high-affinity branched-chain amino acid transport ATP-binding proteinlivF (LIV-I protein F)
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_384_3
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(1367..2164)
DNA (798bp) protein (266aa)
ABC transporter related bin=GWA2_Methylomirabilis_73_35 species=Methylobacterium sp. genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
braF; High-affinity branched-chain amino acid transport ATP-binding protein braF
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_384_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(2161..3348)
DNA (1188bp) protein (396aa)
Putative branched chain amino acid ABC transporter substrate-binding protein bin=GWC2_Methylomirabilis_70_16 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative branched chain amino acid ABC transporter substrate-binding protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_384_5
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(3345..4256)
DNA (912bp) protein (304aa)
Hypothetical conserved protein bin=GWA2_Methylomirabilis_73_35 species=uncultured prokaryote genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
inner-membrane translocator
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_384_6
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(4256..5047)
DNA (792bp) protein (264aa)
Branched-chain amino acid ABC transporter permease protein bin=GWA2_Methylomirabilis_73_35 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
branched-chain amino acid ABC transporter permease
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_384_7
Anaeromyxobacter sp. Fw109-5, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(5105..5470)
DNA (366bp) protein (122aa)
Two component, sigma54 specific, transcriptional regulator, Fis family Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HCY5_ANADF
two component sigma54 specific Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ABS26581.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain Fw109-5).;"
PLM1_100_coex_sep16_scaffold_384_8
unknown

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comp(5467..5805)
DNA (339bp) protein (113aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_384_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6087..9425
DNA (3339bp) protein (1113aa)
Uncharacterized protein Tax=Leptospirillum sp. Group II 'C75' RepID=U4QVD0_9BACT
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_384_10
unknown

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comp(9367..9495)
DNA (129bp) protein (43aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_384_11
unknown

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comp(9612..9914)
DNA (303bp) protein (101aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_384_12
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(10485..11015)
DNA (531bp) protein (177aa)
hypothetical protein Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037C3DD3
Uncharacterized protein {ECO:0000313|EMBL:ETW99874.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
glyoxalase/bleomycin resistance protein/dioxygenase
PLM1_100_coex_sep16_scaffold_384_13
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11143..11772)
DNA (630bp) protein (210aa)
NERD domain-containing protein bin=GWF2_Methylomirabilis_70_14 species=Methanobacterium formicicum genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_384_14
R_Acidobacteria_67_28, Acidobacteria, Bacteria

Not on your lists

comp(11855..13546)
DNA (1692bp) protein (564aa)
Peptidase M48, Ste24p bin=GWC2_Clostridiales_40_7 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Clostridiales_40_7 organism_group=Firmicute
peptidase M48, Ste24p
Tax=RIFCSPHIGHO2_01_FULL_Acidobacteria_67_28_curated
PLM1_100_coex_sep16_scaffold_384_15
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13785..15140
DNA (1356bp) protein (452aa)
Sugar ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGM33367.1}; species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
sugar ABC transporter periplasmic ligand binding protein; K02027 multiple sugar transport system substrate-binding protein bin=bin9_gal15 species=Burkholderia xenovorans genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin9_gal15 organism_group=GAL15
sugar ABC transporter substrate-binding protein
PLM1_100_coex_sep16_scaffold_384_16
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

15201..16118
DNA (918bp) protein (306aa)
ABC-type transporter, integral membrane subunit Tax=Thermoanaerobacter wiegelii Rt8.B1 RepID=G2MQS5_9THEO
carbohydrate ABC transporter membrane protein 1, CUT1 family
Carbohydrate ABC transporter membrane protein 1, CUT1 family {ECO:0000313|EMBL:ADL08479.1}; species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermosediminibacter.;" source="Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 /; JW/IW-1228P).;"
PLM1_100_coex_sep16_scaffold_384_17
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16115..17005
DNA (891bp) protein (297aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family Tax=Burkholderia xenovorans (strain LB400) RepID=Q13J89_BURXL
binding--dependent transport system inner membrane component family protein
Carbohydrate ABC transporter membrane protein 2, CUT1 family {ECO:0000313|EMBL:ABE35850.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
PLM1_100_coex_sep16_scaffold_384_18
RBG_16_Planctomycetes_64_12_curated, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

17002..17877
DNA (876bp) protein (292aa)
hypothetical protein Tax=Elioraea tepidiphila RepID=UPI00036F662C
oxidoreductase
Tax=RBG_16_Planctomycetes_64_12_curated
PLM1_100_coex_sep16_scaffold_384_19
unknown

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comp(17934..18038)
DNA (105bp) protein (35aa)

This feature has no annotations

Displaying 19 items

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