ggKbase home page

PLM1_100_coex_sep16_scaffold_468

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_468_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

2..418
DNA (417bp) protein (139aa)
id=4492351 bin=GWF2_Methylomirabilis_70_14 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_468_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

418..1830
DNA (1413bp) protein (471aa)
Amidase bin=GWF2_Methylomirabilis_70_14 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
amidase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_468_3
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1838..2215
DNA (378bp) protein (126aa)
Putative fluoride ion transporter CrcB Tax=Anaeromyxobacter sp. (strain Fw109-5) RepID=A7HGD5_ANADF
camphor resistance protein CrcB
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_468_4
unknown

Not on your lists

comp(2212..2430)
DNA (219bp) protein (73aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_468_5
R_Rokubacteria_68_19, Rokubacteria, Bacteria

Not on your lists

2517..2912
DNA (396bp) protein (132aa)
id=14626280 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_100_coex_sep16_scaffold_468_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2920..4047
DNA (1128bp) protein (376aa)
hypothetical protein Tax=Methylobacter marinus RepID=UPI00037AC153
Uncharacterized protein {ECO:0000313|EMBL:CCU62350.1}; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
PLM1_100_coex_sep16_scaffold_468_7
RLO_PLX_64_10, Bacteria

Not on your lists

comp(4375..4878)
DNA (504bp) protein (168aa)
hypothetical protein Tax=Desulfovibrio longus RepID=UPI0003B6D489
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
PLM1_100_coex_sep16_scaffold_468_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

4921..5349
DNA (429bp) protein (143aa)
UspA domain protein bin=GWC2_Methylomirabilis_70_24 species=Pedosphaera parvula genus=Pedosphaera taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
UspA domain-containing protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_468_9
unknown

Not on your lists

5346..5726
DNA (381bp) protein (127aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_468_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

5933..6517
DNA (585bp) protein (195aa)
hypothetical protein Tax=Gemmata obscuriglobus RepID=UPI00016C3DB7
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_468_11
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

6567..7418
DNA (852bp) protein (284aa)
Hydrolase, alpha/beta domain protein bin=GWC2_Methylomirabilis_70_24 species=Geobacillus sp. GHH01 genus=Geobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
alpha/beta hydrolase fold protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_468_12
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

7490..8548
DNA (1059bp) protein (353aa)
Putative Monooxygenase FAD-binding protein bin=GWC2_Methylomirabilis_70_24 species=Nitrolancetus hollandicus genus=Nitrolancetus taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
monooxygenase FAD-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_468_13
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8627..9379
DNA (753bp) protein (251aa)
SNARE associated Golgi protein-like protein bin=GWC2_Methylomirabilis_70_16 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_468_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9709..10725
DNA (1017bp) protein (339aa)
aroF; phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase (Phospho-2-keto-3-deoxyheptonate aldolase) (DAHP synthetase) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase) bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_468_15
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(10840..11733)
DNA (894bp) protein (298aa)
Putative Hybrid sensor histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
putative PAS/PAC sensor protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_468_16
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

comp(11730..13148)
DNA (1419bp) protein (473aa)
Multi-sensor signal transduction histidine kinase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor hybrid histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_468_17
CG_Rhodocyc_01, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13145..13963)
DNA (819bp) protein (273aa)
Putative uncharacterized protein bin=GWE1_T_denit_62_9 species=Limnobacter sp. MED105 genus=Limnobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
ABC transporter substrate-binding protein
Tax=CG_Rhodocyc_01
Displaying 17 items

View Taxonomy