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PLM1_100_coex_sep16_scaffold_598

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_598_1
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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1..2550
DNA (2550bp) protein (850aa)
DNA polymerase bin=GWC2_Methylomirabilis_70_16 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
DNA polymerase I
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_598_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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2547..3179
DNA (633bp) protein (211aa)
Dephospho-CoA kinase bin=GWF2_Methylomirabilis_70_14 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
dephospho-coenzyme A kinase
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_598_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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3387..4007
DNA (621bp) protein (207aa)
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A bin=GWF2_Methylomirabilis_70_14 species=Thiorhodovibrio sp. 970 genus=Thiorhodovibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_598_4
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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4120..4890
DNA (771bp) protein (257aa)
Gp37Gp68 family protein bin=GWA2_Methylomirabilis_73_35 species=Desulfotomaculum gibsoniae genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Gp37Gp68 family protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_598_5
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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4962..5696
DNA (735bp) protein (245aa)
id=3240861 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_598_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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5853..7313
DNA (1461bp) protein (487aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Clostridium clariflavum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
metallo-beta-lactamase superfamily hydrolase
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_598_7
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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7313..9571
DNA (2259bp) protein (753aa)
Cell division protein bin=GWF2_Methylomirabilis_70_14 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cell division protein FtsK
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_598_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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9572..10327
DNA (756bp) protein (252aa)
Outer-membrane lipoprotein carrier protein bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Outer-membrane lipoprotein carrier protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_598_9
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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10342..10839
DNA (498bp) protein (166aa)
UPF0234 protein Acid345_2028 bin=GWC2_Methylomirabilis_70_24 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
nucleotide-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_598_10
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10944..11498
DNA (555bp) protein (185aa)
fasciclin Tax=Hymenobacter norwichensis RepID=UPI0003B71F8C
hypothetical protein
Putative exported protein {ECO:0000313|EMBL:CAY49576.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain SBW25).;"
PLM1_100_coex_sep16_scaffold_598_11
RIFOXYD12_FULL_Elusimicrobia_66_9_curated, Elusimicrobia, Bacteria

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comp(11583..12137)
DNA (555bp) protein (185aa)
Uncharacterized protein bin=GWA2_Elusimicrobia_66_18 species=unknown genus=Flavobacterium taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
hypothetical protein
Tax=RIFOXYD12_FULL_Elusimicrobia_66_9_curated
PLM1_100_coex_sep16_scaffold_598_12
Nitrosomonas sp. Is79A3, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12134..12526)
DNA (393bp) protein (131aa)
Copper resistance protein CopC Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GE56_NITSI
copper resistance protein CopC
Copper resistance protein CopC {ECO:0000313|EMBL:AEJ03272.1}; Flags: Precursor;; species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas sp. (strain Is79A3).;"
PLM1_100_coex_sep16_scaffold_598_13
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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comp(12540..12923)
DNA (384bp) protein (128aa)
copper resistance protein CopC; K07156 bin=bin7_NC10_sister species=Nitrosococcus halophilus genus=Nitrosococcus taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
copper resistance protein CopC
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_598_14
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(12920..14161)
DNA (1242bp) protein (414aa)
Uncharacterized protein Tax=Candidatus Nitrospira defluvii RepID=D8PAZ5_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK40404.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM1_100_coex_sep16_scaffold_598_15
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

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comp(14158..16185)
DNA (2028bp) protein (676aa)
Putative TonB-dependent receptor Tax=Candidatus Nitrospira defluvii RepID=D8PB01_9BACT
putative TonB-dependent receptor
Putative TonB-dependent receptor {ECO:0000313|EMBL:CBK40410.1}; species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
PLM1_100_coex_sep16_scaffold_598_16
Candidatus Methylomirabilis oxyfera, Candidatus Methylomirabilis, Bacteria

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comp(16194..16979)
DNA (786bp) protein (262aa)
Uncharacterized protein Tax=Candidatus Methylomirabilis oxyfera RepID=D5MGT4_9BACT
Protein tonB2
Uncharacterized protein {ECO:0000313|EMBL:CBE68965.1}; species="Bacteria; candidate division NC10; Candidatus Methylomirabilis.;" source="Candidatus Methylomirabilis oxyfera.;"
PLM1_100_coex_sep16_scaffold_598_17
unknown

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comp(17067..17591)
DNA (525bp) protein (175aa)

This feature has no annotations

PLM1_100_coex_sep16_scaffold_598_18
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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17690..19000
DNA (1311bp) protein (437aa)
Ribosomal protein S12 methylthiotransferase RimO bin=GWF2_Methylomirabilis_70_14 species=Thermincola potens genus=Thermincola taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
MiaB-like tRNA modifying enzyme YliG
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_598_19
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

19032..19478
DNA (447bp) protein (149aa)
Phosphatidylglycerophosphatase A bin=GWC2_Methylomirabilis_70_24 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
phosphatidylglycerophosphatase A
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_598_20
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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19475..20725
DNA (1251bp) protein (417aa)
CinA-like protein bin=GWF2_Methylomirabilis_70_14 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cinA; competence-damage inducible protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_598_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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20760..21383
DNA (624bp) protein (208aa)
2'-5' RNA ligase bin=GWF2_Methylomirabilis_70_14 species=Thermovirga lienii genus=Thermovirga taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_598_22
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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21399..21689
DNA (291bp) protein (97aa)
Protein RecA bin=GWC2_Methylomirabilis_70_24 species=Pelotomaculum thermopropionicum genus=Pelotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
RecA; RecA/RadA recombinase
Tax=GWC2_Rokubacteria_70_16_curated
Displaying 22 items

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