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PLM1_100_coex_sep16_scaffold_669

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_669_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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1..483
DNA (483bp) protein (161aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase bin=GWF2_Methylomirabilis_70_14 species=Desmospora sp. 8437 genus=Desmospora taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_669_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists


548..1891
DNA (1344bp) protein (448aa)
Signal recognition particle protein bin=GWC2_Methylomirabilis_70_24 species=unknown genus=Thermaerobacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
signal recognition particle subunit FFH/SRP54 (srp54)
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_669_3
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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1939..2202
DNA (264bp) protein (88aa)
30S ribosomal protein S16 bin=GWC2_Methylomirabilis_70_24 species=Ammonifex degensii genus=Ammonifex taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
30S ribosomal protein S16
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_669_4
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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2229..2732
DNA (504bp) protein (168aa)
Ribosome maturation factor RimM bin=GWC2_Methylomirabilis_70_24 species=Thermobaculum terrenum genus=Thermobaculum taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
16S rRNA processing protein RimM
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_669_5
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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2729..3490
DNA (762bp) protein (254aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase bin=GWF2_Methylomirabilis_70_14 species=Thermobacillus composti genus=Thermobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_669_6
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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3516..3887
DNA (372bp) protein (124aa)
50S ribosomal protein L19 bin=GWC2_Methylomirabilis_70_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ribosomal protein L19
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_669_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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3897..4550
DNA (654bp) protein (218aa)
rnhB; ribonuclease HII (EC:3.1.26.4)
Ribonuclease HII bin=GWA2_Methylomirabilis_73_35 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_669_8
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

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4563..4943
DNA (381bp) protein (127aa)
UPF0102 protein Glov_2230 bin=GWC2_Methylomirabilis_70_16 species=Geobacter lovleyi genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
hypothetical protein
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_669_9
R_Rokubacteria_69_13, Rokubacteria, Bacteria

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5076..5729
DNA (654bp) protein (218aa)
isochorismatase hydrolase bin=bin7_NC10_sister species=Rubrobacter xylanophilus genus=Rubrobacter taxon_order=Rubrobacterales taxon_class=Actinobacteria phylum=Actinobacteria tax=bin7_NC10_sister organism_group=NC10
isochorismatase hydrolase
Tax=RIFCSPHIGHO2_02_FULL_Rokubacteria_69_13_curated
PLM1_100_coex_sep16_scaffold_669_10
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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5740..6669
DNA (930bp) protein (310aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_669_11
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

6777..8084
DNA (1308bp) protein (436aa)
Glutamate-1-semialdehyde 2,1-aminomutase bin=GWC2_Methylomirabilis_70_16 species=alpha proteobacterium BAL199 genus=unknown taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
aminotransferase class-III
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_669_12
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

8119..9405
DNA (1287bp) protein (429aa)
Extracellular ligand-binding receptor bin=GWC2_Methylomirabilis_70_16 species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
extracellular ligand-binding receptor
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_669_13
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

9500..9910
DNA (411bp) protein (137aa)
ABC transporter ATP-binding protein bin=GWF2_Methylomirabilis_70_14 species=Symbiobacterium thermophilum genus=Symbiobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC transporter ATP-binding protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_669_14
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

9907..10116
DNA (210bp) protein (70aa)
ABC transporter related bin=GWC2_Methylomirabilis_70_16 species=unknown genus=Methylobacterium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
livG3; high-affinity branched-chain amino acid transport ATP-binding protein LivG
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_669_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10116..10823
DNA (708bp) protein (236aa)
ABC transporter related protein bin=GWF2_Methylomirabilis_70_14 species=Afipia sp. 1NLS2 genus=Afipia taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ABC-type branched-chain amino acid transport systems, ATPase component
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_669_16
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

10827..11690
DNA (864bp) protein (288aa)
Inner-membrane translocator bin=GWC2_Methylomirabilis_70_16 species=Halorubrum saccharovorum genus=Halorubrum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
ABC transporter permease
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_669_17
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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11696..12649
DNA (954bp) protein (318aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein bin=bin7_NC10_sister species=Alicyclobacillus pohliae genus=Alicyclobacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
inner-membrane translocator
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_669_18
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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comp(12689..13102)
DNA (414bp) protein (138aa)
Deoxyuridine 5'-triphosphate nucleotidohydrolase Tax=Micromonospora lupini str. Lupac 08 RepID=I0KYX9_9ACTO
deoxyuridine 5'-triphosphate nucleotidohydrolase dut
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_669_19
Tsukamurella paurometabola, Tsukamurella, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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13419..14321
DNA (903bp) protein (301aa)
Uncharacterized protein Tax=Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 / NBRC 16120 / NCTC 13040) RepID=D5UUE4_TSUPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG77515.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Tsukamurellaceae; Tsukamurella.;" source="Tsukamurella paurometabola (strain ATCC 8368 / DSM 20162 / JCM 10117 /; NBRC 16120 / NCTC 13040) (Corynebacterium paurometabolum).;"
PLM1_100_coex_sep16_scaffold_669_20
GWC2_Rokubacteria_70_16_curated, Rokubacteria, Bacteria

Not on your lists

comp(14278..14649)
DNA (372bp) protein (124aa)
Histidine kinase bin=GWC2_Methylomirabilis_70_16 species=Aromatoleum aromaticum genus=Aromatoleum taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
response regulator receiver
Tax=GWC2_Rokubacteria_70_16_curated
PLM1_100_coex_sep16_scaffold_669_21
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

14667..16253
DNA (1587bp) protein (529aa)
Competence ATPase ComM bin=GWC2_Methylomirabilis_70_24 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
transcriptional regulator
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_669_22
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16368..16829
DNA (462bp) protein (154aa)
Isochorismatase hydrolase bin=GWF2_Methylomirabilis_70_14 species=unknown genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
isochorismatase hydrolase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_669_23
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

16829..17260
DNA (432bp) protein (144aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Singulisphaera acidiphila genus=Singulisphaera taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_669_24
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

17301..18008
DNA (708bp) protein (236aa)
Transcriptional regulator, Crp/Fnr family bin=GWA2_Methylomirabilis_73_35 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Crp/Fnr family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_669_25
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(18005..18679)
DNA (675bp) protein (225aa)
soluble lytic murein transglycosylase (EC:3.2.1.-)
Lytic transglycosylase, catalytic bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_669_26
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

comp(18816..19403)
DNA (588bp) protein (196aa)
Lon protease bin=GWC2_Methylomirabilis_70_24 species=Candidatus Koribacter versatilis genus=Candidatus Koribacter taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
ATP-dependent protease La
Tax=GWA2_Rokubacteria_70_23_curated
Displaying 26 items

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