ggKbase home page

PLM1_100_coex_sep16_scaffold_2258

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_2258_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

1..201
DNA (201bp) protein (67aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Caldilinea aerophila genus=Caldilinea taxon_order=Caldilineales taxon_class=Caldilineae phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_2258_2
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

215..898
DNA (684bp) protein (228aa)
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III (DNA-(Apurinic or apyrimidinic site) lyase) bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_2258_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(870..1634)
DNA (765bp) protein (255aa)
hypothetical protein Tax=Atribacteria bacterium SCGC AAA252-M02 RepID=UPI00037D6885
short-chain dehydrogenase/reductase SDR
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
PLM1_100_coex_sep16_scaffold_2258_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


1780..2232
DNA (453bp) protein (151aa)
50S ribosomal protein L13 bin=GWA2_Methylomirabilis_73_35 species=Bacillus azotoformans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
rplM; 50S ribosomal protein L13
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_2258_5
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


2233..2631
DNA (399bp) protein (133aa)
30S ribosomal protein S9 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
30S ribosomal protein S9
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_2258_6
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

2637..3701
DNA (1065bp) protein (355aa)
argC; n-acetyl-gamma-glutamyl-phosphate reductase (EC:1.2.1.38)
N-acetyl-gamma-glutamyl-phosphate reductase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_2258_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

3707..4921
DNA (1215bp) protein (405aa)
arginine biosynthesis bifunctional protein ArgJ (EC:2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ bin=GWA2_Methylomirabilis_73_35 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2258_8
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists


4936..5499
DNA (564bp) protein (188aa)
30S ribosomal protein S2 bin=GWA2_Methylomirabilis_73_35 species=Salimicrobium sp. MJ3 genus=Salimicrobium taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
SSU ribosomal protein S2P
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_2258_9
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

5499..6104
DNA (606bp) protein (202aa)
translation elongation factor Ts; K02357 elongation factor Ts bin=bin7_NC10_sister species=Caldicellulosiruptor obsidiansis genus=Caldicellulosiruptor taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
tsf; elongation factor Ts
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_2258_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6107..6847
DNA (741bp) protein (247aa)
pyrH; uridylate kinase (EC:2.7.4.22)
Uridylate kinase bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2258_11
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

6903..7457
DNA (555bp) protein (185aa)
Ribosome-recycling factor bin=GWA2_Methylomirabilis_73_35 species=Desulfovibrio fructosivorans genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ribosome recycling factor
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_2258_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7532..8224
DNA (693bp) protein (231aa)
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_2258_13
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

8431..9051
DNA (621bp) protein (207aa)
Phosphatidate cytidylyltransferase bin=GWA2_Methylomirabilis_73_35 species=Heliobacterium modesticaldum genus=Heliobacterium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
phosphatidate cytidylyltransferase
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_2258_14
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

9048..10226
DNA (1179bp) protein (393aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267); K00099 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] bin=bin7_NC10_sister species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=bin7_NC10_sister organism_group=NC10
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_2258_15
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

10217..10996
DNA (780bp) protein (260aa)
rseP; regulator of sigma E protease (EC:3.4.24.-); K11749 regulator of sigma E protease [EC:3.4.24.-] bin=bin7_NC10_sister species=Thioalkalivibrio sp. ALJ24 genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
membrane-associated zinc metalloprotease
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
Displaying 15 items

View Taxonomy