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PLM1_100_coex_sep16_scaffold_1033

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_1033_1
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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1..483
DNA (483bp) protein (161aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_1033_2
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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499..909
DNA (411bp) protein (137aa)
iscU; iron-sulfur cluster assembly protein IscU; K04488 nitrogen fixation protein NifU and related proteins bin=bin7_NC10_sister species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=bin7_NC10_sister organism_group=NC10
iscU; scaffold protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_1033_3
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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936..1655
DNA (720bp) protein (240aa)
Co-chaperone protein HscB (Hsc20) bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
co-chaperone Hsc20
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1033_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1633..3507
DNA (1875bp) protein (625aa)
hscA; chaperone protein HscA; K04043 molecular chaperone DnaK bin=bin7_NC10_sister species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=bin7_NC10_sister organism_group=NC10
hscA; chaperone protein HscA
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1033_5
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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3507..3830
DNA (324bp) protein (108aa)
Ferredoxin, 2Fe-2S type, ISC system bin=GWA2_Methylomirabilis_73_35 species=Acidobacterium capsulatum genus=Acidobacterium taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
ferredoxin
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_1033_6
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

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3892..4098
DNA (207bp) protein (69aa)
hypothetical protein bin=bin7_NC10_sister species=Gloeobacter violaceus genus=Gloeobacter taxon_order=Gloeobacterales taxon_class=Gloeobacteria phylum=Cyanobacteria tax=bin7_NC10_sister organism_group=NC10
iscX; FeS assembly protein IscX
Tax=CSP1_6_Rokubacteria
PLM1_100_coex_sep16_scaffold_1033_7
R_Rokubacteria_71_18, Rokubacteria, Bacteria

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comp(4253..4477)
DNA (225bp) protein (75aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_1033_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(4483..4839)
DNA (357bp) protein (119aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_1033_9
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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comp(4850..5173)
DNA (324bp) protein (108aa)
Putative uncharacterized protein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Poribacteria sp. WGA-A3 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Poribacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1033_10
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

5215..6372
DNA (1158bp) protein (386aa)
cysteine desulfurase (EC:2.8.1.7)
Cysteine desulfurase bin=GWF2_Methylomirabilis_70_14 species=Mahella australiensis genus=Mahella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Methylomirabilis_70_14 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_1033_11
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

Not on your lists

6369..6752
DNA (384bp) protein (128aa)
nifU; FeS cluster assembly scaffold protein NifU; K04488 nitrogen fixation protein NifU and related proteins bin=bin7_NC10_sister species=Oscillibacter sp. 1-3 genus=Oscillibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=bin7_NC10_sister organism_group=NC10
FeS cluster assembly scaffold protein NifU
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_1033_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

Not on your lists

6752..7435
DNA (684bp) protein (228aa)
cysE; serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM1_100_coex_sep16_scaffold_1033_13
R_Rokubacteria_71_18, Rokubacteria, Bacteria

Not on your lists

7519..7992
DNA (474bp) protein (158aa)
Metal dependent phosphohydrolase bin=GWA2_Methylomirabilis_73_35 species=Kyrpidia tusciae genus=Kyrpidia taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
metal dependent phosphohydrolase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated
PLM1_100_coex_sep16_scaffold_1033_14
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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8051..8320
DNA (270bp) protein (90aa)
hypothetical protein bin=GWA2_Methylomirabilis_73_35 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
Displaying 14 items

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