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PLM1_100_coex_sep16_scaffold_1718

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM1_100_coex_sep16_scaffold_1718_1
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(3..164)
DNA (162bp) protein (54aa)
Uncharacterized protein Tax=Blastopirellula marina DSM 3645 RepID=A3ZUJ5_9PLAN
metallophosphoesterase
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_1718_2
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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comp(165..1043)
DNA (879bp) protein (293aa)
Radical SAM domain protein Tax=Blastopirellula marina DSM 3645 RepID=A3ZUJ6_9PLAN bin=16ft_combo_ws3_JS1 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
radical SAM domain-containing protein
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_1718_3
Geobacter uraniireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1013..1816)
DNA (804bp) protein (268aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_24 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ27504.1}; species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter uraniireducens (strain Rf4) (Geobacter uraniumreducens).;"
PLM1_100_coex_sep16_scaffold_1718_4
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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1955..2149
DNA (195bp) protein (65aa)
Putative thioredoxin bin=GWA2_Methylomirabilis_73_35 species=unknown genus=Rhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
redoxin domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1718_5
RLO_Rokubacteria_71_22, Rokubacteria, Bacteria

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2177..2476
DNA (300bp) protein (100aa)
Cytochrome c biogenesis protein, transmembrane region bin=GWA2_Methylomirabilis_73_35 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
cytochrome C biogenesis protein transmembrane region
Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated
PLM1_100_coex_sep16_scaffold_1718_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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2484..4121
DNA (1638bp) protein (546aa)
Integral membrane sensor signal transduction histidine kinase bin=GWA2_Methylomirabilis_73_35 species=Haliangium ochraceum genus=Haliangium taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
sensor histidine kinase
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1718_7
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4122..4802
DNA (681bp) protein (227aa)
DNA-binding response regulator bin=GWA2_Methylomirabilis_73_35 species=RAAC39 genus=RAAC39 taxon_order=RAAC39 taxon_class=Ignavibacteria phylum=Ignavibacteriae tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
DNA-binding response regulator
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1718_8
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

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4827..5780
DNA (954bp) protein (318aa)
Sulfoxide reductase catalytic subunit YedY bin=GWC2_Methylomirabilis_70_24 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
yedY; exported heme-molybdoenzyme molybdopterin-containing subunit YedY; TAT export
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_1718_9
R_Rokubacteria_68_19, Rokubacteria, Bacteria

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5777..6274
DNA (498bp) protein (166aa)
Sulfoxide reductase heme-binding subunit YedZ bin=GWC2_Methylomirabilis_70_16 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
yedZ; heme-molybdoenzyme heme-containing subunit YedZ; cytochrome b subunit
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_68_19_curated
PLM1_100_coex_sep16_scaffold_1718_10
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

6346..7710
DNA (1365bp) protein (455aa)
M16 family peptidase (EC:3.4.24.-)
Putative Zn-dependent peptidase bin=GWC2_Methylomirabilis_70_24 species=Desulfomonile tiedjei genus=Desulfomonile taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1718_11
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

7707..9026
DNA (1320bp) protein (440aa)
processing peptidase (EC:3.4.24.64)
Processing peptidase bin=GWC2_Methylomirabilis_70_16 species=Leptolyngbya sp. PCC 6406 genus=Leptolyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1718_12
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(9195..9434)
DNA (240bp) protein (80aa)
id=14627824 bin=bin7_NC10_sister tax=bin7_NC10_sister organism_group=NC10
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1718_13
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

9624..10613
DNA (990bp) protein (330aa)
Putative lipoprotein bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
lipoprotein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1718_14
GWA2_Rokubacteria_70_23_curated, Rokubacteria, Bacteria

Not on your lists

10812..11501
DNA (690bp) protein (230aa)
Putative uncharacterized protein bin=GWC2_Methylomirabilis_70_16 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWC2_Methylomirabilis_70_16 organism_group=NC10
cytochrome c
Tax=GWA2_Rokubacteria_70_23_curated
PLM1_100_coex_sep16_scaffold_1718_15
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

11679..12683
DNA (1005bp) protein (335aa)
FecR protein bin=GWA2_Elusimicrobia_69_24 species=Caldithrix abyssi genus=Caldithrix taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
FecR domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM1_100_coex_sep16_scaffold_1718_16
unknown

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comp(12680..12802)
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying 16 items

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