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PLM1_100_coex_sep16_Rokubacteria_71_11

PLM1_100cm_coex_sep2016_Rokubacteria_71_11
In projects: PLM1_100cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 351-400 of 679 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_100_coex_sep16_scaffold_7137
Domain: Bacteria (83.33%)
6 3687 bp 70.63 10.58 89.99
PLM1_100_coex_sep16_scaffold_5269
Domain: Bacteria (60%)
5 3155 bp 72.52 10.60 91.66
PLM1_100_coex_sep16_scaffold_855
Domain: Bacteria (78.57%)
14 13018 bp 72.50 10.60 94.16
PLM1_100_coex_sep16_scaffold_2279
Domain: Bacteria (71.43%)
7 4897 bp 71.94 10.60 98.94
PLM1_100_coex_sep16_scaffold_7601
Domain: Bacteria (100%)
5 2630 bp 68.56 10.61 88.52
PLM1_100_coex_sep16_scaffold_5402
Phylum: Rokubacteria (71.43%)
7 4680 bp 68.01 10.61 97.12
PLM1_100_coex_sep16_scaffold_7317
Domain: Bacteria (100%)
7 7089 bp 70.17 10.62 93.06
PLM1_100_coex_sep16_scaffold_4663
Phylum: Rokubacteria (71.43%)
7 4903 bp 70.04 10.62 93.43
PLM1_100_coex_sep16_scaffold_3022
Phylum: Proteobacteria (57.14%)
7 5580 bp 66.33 10.62 80.32
PLM1_100_coex_sep16_scaffold_718
Phylum: Rokubacteria (84.21%)
19 18242 bp 71.96 10.62 94.48
PLM1_100_coex_sep16_scaffold_4175
Domain: Bacteria (66.67%)
3 3556 bp 70.98 10.63 93.98
PLM1_100_coex_sep16_scaffold_6221
Phylum: Proteobacteria (66.67%)
6 3767 bp 70.37 10.63 88.88
PLM1_100_coex_sep16_scaffold_2937
Species: RLO_Rokubacteria_71_22 (60%)
5 4298 bp 70.34 10.64 91.58
PLM1_100_coex_sep16_scaffold_7266
Species: R_Rokubacteria_73_56 (80%)
5 2692 bp 71.88 10.64 94.39
PLM1_100_coex_sep16_scaffold_996
Species: R_Rokubacteria_73_56 (63.64%)
11 7675 bp 72.52 10.65 97.21
PLM1_100_coex_sep16_scaffold_2601
Domain: Bacteria (100%)
3 4578 bp 70.88 10.65 96.20
PLM1_100_coex_sep16_scaffold_1773
Phylum: Rokubacteria (70%)
10 10804 bp 71.95 10.65 97.33
PLM1_100_coex_sep16_scaffold_4791
Domain: Bacteria (80%)
5 4619 bp 67.92 10.65 92.16
PLM1_100_coex_sep16_scaffold_4228 5 4603 bp 71.41 10.66 82.19
PLM1_100_coex_sep16_scaffold_3875
Phylum: Rokubacteria (90%)
10 6937 bp 72.34 10.66 95.10
PLM1_100_coex_sep16_scaffold_1255
Species: Sorangium cellulosum (57.14%)
7 6801 bp 71.84 10.67 94.49
PLM1_100_coex_sep16_scaffold_388
Phylum: Rokubacteria (53.33%)
15 13128 bp 70.09 10.67 95.11
PLM1_100_coex_sep16_scaffold_5798
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 3017 bp 65.56 10.69 96.55
PLM1_100_coex_sep16_scaffold_1416
Phylum: Rokubacteria (75%)
12 11493 bp 73.50 10.69 89.92
PLM1_100_coex_sep16_scaffold_1221
Phylum: Rokubacteria (100%)
8 8413 bp 69.65 10.70 87.86
PLM1_100_coex_sep16_scaffold_5865
Species: RLO_Rokubacteria_71_22 (50%)
4 4620 bp 71.95 10.71 88.51
PLM1_100_coex_sep16_scaffold_1532
Phylum: Rokubacteria (85.71%)
7 6785 bp 70.74 10.72 95.46
PLM1_100_coex_sep16_scaffold_1717
Species: R_Rokubacteria_73_56 (57.14%)
7 5734 bp 76.37 10.73 99.25
PLM1_100_coex_sep16_scaffold_999
Domain: Bacteria (83.33%)
6 8665 bp 68.91 10.73 94.80
PLM1_100_coex_sep16_scaffold_3264
Species: RLO_Rokubacteria_71_22 (62.5%)
8 7466 bp 73.36 10.73 96.16
PLM1_100_coex_sep16_scaffold_7159
Phylum: Rokubacteria (66.67%)
3 2713 bp 70.66 10.73 91.89
PLM1_100_coex_sep16_scaffold_5802
Domain: Bacteria (80%)
5 3016 bp 68.97 10.74 89.92
PLM1_100_coex_sep16_scaffold_2095
Species: R_Rokubacteria_73_56 (50%)
6 5124 bp 68.66 10.74 95.02
PLM1_100_coex_sep16_scaffold_4038
Domain: Bacteria (100%)
9 6483 bp 70.91 10.74 96.48
PLM1_100_coex_sep16_scaffold_921
Species: GWA2_Rokubacteria_73_35_curated (50%)
8 8774 bp 71.26 10.74 83.29
PLM1_100_coex_sep16_scaffold_2263
Phylum: Proteobacteria (50%)
10 10673 bp 73.33 10.74 97.40
PLM1_100_coex_sep16_scaffold_4918
Species: Candidatus Entotheonella sp. TSY1 (50%)
4 3266 bp 69.38 10.75 82.76
PLM1_100_coex_sep16_scaffold_1588
Domain: Bacteria (62.5%)
8 5973 bp 72.53 10.75 93.27
PLM1_100_coex_sep16_scaffold_2481
Genus: Bradyrhizobium (50%)
4 5115 bp 70.50 10.76 95.72
PLM1_100_coex_sep16_scaffold_2013
Species: R_Rokubacteria_71_18 (57.14%)
7 5228 bp 70.47 10.76 99.16
PLM1_100_coex_sep16_scaffold_2108
Phylum: Rokubacteria (85.71%)
14 10826 bp 69.90 10.78 96.52
PLM1_100_coex_sep16_scaffold_396
Phylum: Rokubacteria (70.59%)
17 19746 bp 68.84 10.78 94.96
PLM1_100_coex_sep16_scaffold_1744
Species: R_Rokubacteria_73_56 (50%)
12 10117 bp 75.28 10.79 98.39
PLM1_100_coex_sep16_scaffold_4925
Phylum: Rokubacteria (100%)
4 3265 bp 72.47 10.80 87.20
PLM1_100_coex_sep16_scaffold_12319
Phylum: Rokubacteria (66.67%)
3 3140 bp 72.42 10.80 91.24
PLM1_100_coex_sep16_scaffold_915
Phylum: Rokubacteria (50%)
12 11551 bp 69.57 10.80 95.50
PLM1_100_coex_sep16_scaffold_3895
Phylum: Rokubacteria (53.33%)
15 10813 bp 69.32 10.81 91.39
PLM1_100_coex_sep16_scaffold_7577
Species: R_Rokubacteria_73_56 (50%)
4 2633 bp 73.03 10.82 89.44
PLM1_100_coex_sep16_scaffold_492
Phylum: Rokubacteria (93.33%)
15 12198 bp 72.24 10.82 97.12
PLM1_100_coex_sep16_scaffold_7643
Domain: Bacteria (80%)
5 4715 bp 71.16 10.82 100.15
Displaying items 351-400 of 679 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.