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PLM1_100_coex_sep16_Rokubacteria_71_11

PLM1_100cm_coex_sep2016_Rokubacteria_71_11
In projects: PLM1_100cm_coex_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p  |  rokubacteria_ggkbase

Consensus taxonomy: Rokubacteria  →  Bacteria

Displaying items 401-450 of 679 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM1_100_coex_sep16_scaffold_1363
Phylum: Rokubacteria (100%)
9 7654 bp 70.64 10.82 98.30
PLM1_100_coex_sep16_scaffold_2626
Domain: Bacteria (70%)
10 10833 bp 69.57 10.83 98.42
PLM1_100_coex_sep16_scaffold_1033
Phylum: Rokubacteria (92.86%)
14 8320 bp 70.11 10.84 94.90
PLM1_100_coex_sep16_scaffold_9771
Species: R_Rokubacteria_73_56 (75%)
4 4040 bp 74.13 10.84 87.62
PLM1_100_coex_sep16_scaffold_3722
Species: GWA2_Rokubacteria_73_35_curated (100%)
6 3773 bp 68.38 10.85 85.79
PLM1_100_coex_sep16_scaffold_2337
Phylum: Rokubacteria (66.67%)
6 5558 bp 71.28 10.85 95.48
PLM1_100_coex_sep16_scaffold_1352
Phylum: Rokubacteria (62.5%)
8 7980 bp 73.12 10.85 95.23
PLM1_100_coex_sep16_scaffold_7560 5 2637 bp 69.09 10.86 89.99
PLM1_100_coex_sep16_scaffold_3355
Species: GWA2_Rokubacteria_73_35_curated (60%)
5 3988 bp 71.19 10.87 100.50
PLM1_100_coex_sep16_scaffold_2345
Species: CSP1_6_Rokubacteria (66.67%)
3 4824 bp 70.15 10.88 99.69
PLM1_100_coex_sep16_scaffold_1196
Phylum: Rokubacteria (66.67%)
12 9594 bp 72.46 10.88 93.37
PLM1_100_coex_sep16_scaffold_482
Phylum: Rokubacteria (94.12%)
17 18446 bp 72.83 10.90 93.99
PLM1_100_coex_sep16_scaffold_1247
Phylum: Rokubacteria (88.89%)
9 6825 bp 74.29 10.90 99.60
PLM1_100_coex_sep16_scaffold_3271
Domain: Bacteria (71.43%)
7 4049 bp 67.99 10.93 82.84
PLM1_100_coex_sep16_scaffold_2178
Domain: Bacteria (66.67%)
6 6150 bp 70.62 10.93 92.63
PLM1_100_coex_sep16_scaffold_1517
Domain: Bacteria (88.89%)
9 6100 bp 71.70 10.94 95.26
PLM1_100_coex_sep16_scaffold_5852
Domain: Bacteria (60%)
5 3003 bp 70.66 10.94 92.31
PLM1_100_coex_sep16_scaffold_11575
Domain: Bacteria (55.56%)
9 3673 bp 68.99 10.94 86.66
PLM1_100_coex_sep16_scaffold_1147
Domain: Bacteria (76.92%)
13 9430 bp 71.24 10.94 90.76
PLM1_100_coex_sep16_scaffold_168
Phylum: Rokubacteria (60.87%)
23 22699 bp 71.92 10.94 94.02
PLM1_100_coex_sep16_scaffold_2859
Phylum: Rokubacteria (83.33%)
6 4353 bp 68.67 10.96 90.83
PLM1_100_coex_sep16_scaffold_1261
Species: R_Rokubacteria_73_56 (55.56%)
9 6791 bp 70.53 10.96 93.34
PLM1_100_coex_sep16_scaffold_2746
Phylum: Rokubacteria (83.33%)
6 5828 bp 71.12 10.96 90.24
PLM1_100_coex_sep16_scaffold_2782
Phylum: Rokubacteria (91.67%)
12 9051 bp 70.12 10.97 85.88
PLM1_100_coex_sep16_scaffold_569
Phylum: Rokubacteria (80%)
25 19074 bp 69.84 10.98 89.53
PLM1_100_coex_sep16_scaffold_4669
Domain: Bacteria (77.78%)
9 6360 bp 72.97 10.99 93.49
PLM1_100_coex_sep16_scaffold_4103
Phylum: Rokubacteria (80%)
5 3588 bp 72.69 10.99 97.24
PLM1_100_coex_sep16_scaffold_5340
Species: RLO_Rokubacteria_71_22 (71.43%)
7 5971 bp 71.76 11.00 81.24
PLM1_100_coex_sep16_scaffold_3830
Phylum: Proteobacteria (62.5%)
8 6874 bp 70.67 11.00 98.89
PLM1_100_coex_sep16_scaffold_1152
Phylum: Proteobacteria (71.43%)
7 7105 bp 73.47 11.00 95.38
PLM1_100_coex_sep16_scaffold_5313
Phylum: Rokubacteria (50%)
6 3146 bp 70.95 11.01 96.12
PLM1_100_coex_sep16_scaffold_2959
Domain: Bacteria (60%)
5 4276 bp 71.82 11.01 95.56
PLM1_100_coex_sep16_scaffold_646
Phylum: Proteobacteria (54.55%)
11 9998 bp 70.19 11.01 96.17
PLM1_100_coex_sep16_scaffold_4506
Phylum: Rokubacteria (66.67%)
3 3416 bp 72.57 11.02 90.72
PLM1_100_coex_sep16_scaffold_1624
Species: R_Rokubacteria_73_56 (50%)
16 15009 bp 70.98 11.02 92.90
PLM1_100_coex_sep16_scaffold_6903
Species: GWA2_Rokubacteria_73_35_curated (50%)
2 2761 bp 68.82 11.03 86.60
PLM1_100_coex_sep16_scaffold_1750
Domain: Bacteria (100%)
6 5682 bp 71.84 11.03 96.15
PLM1_100_coex_sep16_scaffold_553
Species: R_Rokubacteria_73_56 (50%)
12 13325 bp 70.42 11.03 90.98
PLM1_100_coex_sep16_scaffold_1136
Phylum: Rokubacteria (100%)
9 7167 bp 72.83 11.03 94.10
PLM1_100_coex_sep16_scaffold_6477
Phylum: Rokubacteria (100%)
4 2854 bp 69.94 11.04 93.34
PLM1_100_coex_sep16_scaffold_6896
Order: Rhodospirillales (50%)
4 3408 bp 71.42 11.05 91.11
PLM1_100_coex_sep16_scaffold_3453
Phylum: Rokubacteria (80%)
10 7965 bp 71.49 11.05 80.57
PLM1_100_coex_sep16_scaffold_2176
Phylum: Rokubacteria (100%)
5 5018 bp 71.54 11.06 96.79
PLM1_100_coex_sep16_scaffold_277
Species: GWA2_Rokubacteria_73_35_curated (50%)
18 16002 bp 71.33 11.07 96.51
PLM1_100_coex_sep16_scaffold_7683
Species: GWA2_Rokubacteria_73_35_curated (100%)
3 2615 bp 73.65 11.07 90.98
PLM1_100_coex_sep16_scaffold_5989
Species: Sphaerobacter thermophilus (100%)
1 2967 bp 72.26 11.07 100.00
PLM1_100_coex_sep16_scaffold_1027
Domain: Bacteria (62.5%)
8 9027 bp 66.80 11.08 86.91
PLM1_100_coex_sep16_scaffold_5386
Species: RLO_Rokubacteria_71_22 (75%)
4 3128 bp 67.65 11.08 95.62
PLM1_100_coex_sep16_scaffold_2067
Species: R_Rokubacteria_73_56 (66.67%)
6 5168 bp 67.65 11.09 97.35
PLM1_100_coex_sep16_scaffold_12418
Species: R_Rokubacteria_73_56 (100%)
4 3572 bp 72.76 11.09 97.68
Displaying items 401-450 of 679 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.