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PLM3_60_coex_sep16_scaffold_4229

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
PLM3_60_coex_sep16_scaffold_4229_1
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(2..865)
DNA (864bp) protein (288aa)
dihydrodipicolinate synthase/N-acetylneuraminate lyase (EC:4.2.1.52)
Dihydrodipicolinate synthase/N-acetylneuraminate lyase bin=GWA2_Methylomirabilis_73_35 species=Blastococcus saxobsidens genus=Blastococcus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_4229_2
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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945..1979
DNA (1035bp) protein (345aa)
2-dehydropantoate 2-reductase bin=GWA2_Methylomirabilis_73_35 species=Variovorax sp. CF313 genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_4229_3
Gordonia effusa, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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1979..2884
DNA (906bp) protein (302aa)
Putative oxidoreductase Tax=Gordonia effusa NBRC 100432 RepID=H0QYT8_9ACTO
Putative oxidoreductase {ECO:0000313|EMBL:GAB17989.1}; species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia effusa NBRC 100432.;"
luciferase-like protein
PLM3_60_coex_sep16_scaffold_4229_4
Amycolatopsis orientalis, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

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comp(2892..4163)
DNA (1272bp) protein (424aa)
RNA polymerase ECF-subfamily sigma factor Tax=Amycolatopsis orientalis HCCB10007 RepID=R4T4P0_AMYOR
rpoE; RNA polymerase ECF-subfamily sigma factor
RNA polymerase ECF-subfamily sigma factor {ECO:0000313|EMBL:AGM10569.1}; species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis orientalis HCCB10007.;"
PLM3_60_coex_sep16_scaffold_4229_5
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(4171..4527)
DNA (357bp) protein (119aa)
hypothetical protein Tax=Amycolatopsis nigrescens RepID=UPI0003664AA1
DGPFAETKE family protein
DGPFAETKE family protein {ECO:0000313|EMBL:ABJ83418.1}; species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
PLM3_60_coex_sep16_scaffold_4229_6
R_Rokubacteria_73_56, Rokubacteria, Bacteria

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4648..5097
DNA (450bp) protein (150aa)
Membrane protein-like protein bin=GWA2_Elusimicrobia_69_24 species=Burkholderia gladioli genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
PLM3_60_coex_sep16_scaffold_4229_7
RBG_16_RIF_WS3X_71_46_curated, RIF-WS3X, Bacteria

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comp(5069..6991)
DNA (1923bp) protein (641aa)
oligopeptide transporter bin=RBG_19FT_COMBO_CP_WS3-like_JS1_11 species=Akkermansia muciniphila genus=Akkermansia taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=RBG_19FT_COMBO_CP_WS3-like_JS1_11 organism_group=Unknown_CP organism_desc=Curation Candidate WS3-like JS1- Novel phyla exclusive to Rifle. 98% similar to 16ft bin
oligopeptide transporter
Tax=RBG_16_RIF_WS3X_71_46_curated
PLM3_60_coex_sep16_scaffold_4229_8
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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7166..7768
DNA (603bp) protein (201aa)
Two component, sigma54 specific, transcriptional regulator, Fis family bin=GWA2_Methylomirabilis_73_35 species=Streptomyces himastatinicus genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
two component, sigma54 specific, transcriptional regulator, Fis family
Tax=GWA2_Rokubacteria_73_35_curated
PLM3_60_coex_sep16_scaffold_4229_9
unknown

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comp(7803..7886)
DNA (84bp) protein (28aa)

This feature has no annotations

Displaying 9 items

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