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ACD51_3

Alias: ACD51_79901.34689.9

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Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
ACD51_3_1

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1..2025
DNA (2025bp) protein (675aa)
Possible TPR repeat-containing protein (Fragment) n=1 Tax=Corynebacterium pseudogenitalium ATCC 33035 RepID=C2BJ78_9CORY (db=UNIREF evalue=2.0e-08 bit_score=64.7 identity=52.17 coverage=9.33333333333333)
seg (db=Seg db_id=seg from=533 to=548)
seg (db=Seg db_id=seg from=551 to=569)
seg (db=Seg db_id=seg from=575 to=592)
ACD51_3_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

2031..2627
DNA (597bp) protein (199aa)
seg (db=Seg db_id=seg from=37 to=46)
seg (db=Seg db_id=seg from=70 to=85)
seg (db=Seg db_id=seg from=141 to=152)
transmembrane_regions (db=TMHMM db_id=tmhmm from=10 to=32)
ACD51_3_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

2624..3256
DNA (633bp) protein (211aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=35)
seg (db=Seg db_id=seg from=28 to=55)
coiled-coil (db=Coil db_id=coil from=180 to=201 evalue=NA)
coiled-coil 180..201 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_3_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

3362..5125
DNA (1764bp) protein (588aa)
seg (db=Seg db_id=seg from=38 to=59)
transmembrane_regions (db=TMHMM db_id=tmhmm from=9 to=31)
seg (db=Seg db_id=seg from=233 to=258)
seg (db=Seg db_id=seg from=263 to=286)
ACD51_3_5
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

5125..6189
DNA (1065bp) protein (355aa)
seg (db=Seg db_id=seg from=155 to=162)
seg (db=Seg db_id=seg from=203 to=216)
seg 155..162 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_3_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6232..6411)
DNA (180bp) protein (60aa)
6232..6411 - (rbs_motif=TAA rbs_spacer=15bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_3_7
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6467..6637)
DNA (171bp) protein (57aa)
excise: DNA binding domain, excisionase fami (db=HMMTigr db_id=TIGR01764 from=5 to=53 evalue=4.2e-16 interpro_id=IPR010093 interpro_description=Excisionase/Xis, DNA-binding GO=Molecular Function: DNA binding (GO:0003677))
excise: DNA binding domain, excisionase fami 5..53 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_3_8
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(6943..9840)
DNA (2898bp) protein (966aa)
excinuclease ABC subunit A
excinuclease ABC subunit A
Excinuclease ABC, A subunit n=1 Tax=Thermincola sp. JR RepID=D5XCB4_9FIRM (db=UNIREF evalue=0.0 bit_score=1218.0 identity=63.35 coverage=96.8944099378882)
seg (db=Seg db_id=seg from=660 to=671)
ACD51_3_9

Not on your lists


comp(9892..10269)
DNA (378bp) protein (126aa)
S23 ribosomal protein n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J642_9FLAO (db=UNIREF evalue=3.0e-23 bit_score=110.0 identity=47.22 coverage=84.9206349206349)
30S ribosomal protein S23
Ribosomal_S23p (db=HMMPfam db_id=PF05635 from=10 to=116 evalue=1.1e-37 interpro_id=IPR008815 interpro_description=23S rRNA-associated protein)
S23 ribosomal protein {ECO:0000313|EMBL:EKD63303.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_3_10
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

10355..10897
DNA (543bp) protein (181aa)
dCTP deaminase (EC:3.5.4.13)
dCTP_deam: deoxycytidine triphosphate deami (db=HMMTigr db_id=TIGR02274 from=2 to=171 evalue=8.1e-76 interpro_id=IPR011962 interpro_description=Deoxycytidine triphosphate deaminase GO=Molecular Function: protein binding (GO:0005515), Biological Process: dUTP biosynthetic process (GO:0006229), Molecular Function: dCTP deaminase activity (GO:0008829))
no description (db=Gene3D db_id=G3DSA:2.70.40.10 from=1 to=174 evalue=8.2e-52)
dUTPase-like (db=superfamily db_id=SSF51283 from=1 to=174 evalue=7.3e-50)
ACD51_3_11

Not on your lists

comp(10894..11421)
DNA (528bp) protein (176aa)
Strongly similar to peroxiredoxin (Thioredoxin peroxidase) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM6_9BACT (db=UNIREF evalue=4.0e-60 bit_score=233.0 identity=63.37 coverage=96.5909090909091)
peroxiredoxin in rubredoxin operon (EC:1.11.1.15)
PEROXIREDOXIN (db=HMMPanther db_id=PTHR10681 from=1 to=172 evalue=6.3e-86)
PEROXIREDOXINS, PRX-1, PRX-2, PRX-3 (db=HMMPanther db_id=PTHR10681:SF8 from=1 to=172 evalue=6.3e-86)
ACD51_3_12
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(11505..12347)
DNA (843bp) protein (281aa)
hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=244 to=266)
transmembrane_regions (db=TMHMM db_id=tmhmm from=160 to=182)
transmembrane_regions (db=TMHMM db_id=tmhmm from=125 to=147)
ACD51_3_13
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(12386..13498)
DNA (1113bp) protein (371aa)
recombination protein F
DNA replication and repair protein recF n=21 Tax=root RepID=C2H8Q3_ENTFC (db=UNIREF evalue=1.0e-55 bit_score=221.0 identity=35.83 coverage=96.7654986522911)
RECF_2 (db=PatternScan db_id=PS00618 from=307 to=325 evalue=0.0 interpro_id=IPR018078 interpro_description=DNA-binding, RecF, conserved site GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
RECF_1 (db=PatternScan db_id=PS00617 from=120 to=140 evalue=0.0 interpro_id=IPR018078 interpro_description=DNA-binding, RecF, conserved site GO=Molecular Function: single-stranded DNA binding (GO:0003697), Molecular Function: ATP binding (GO:0005524), Biological Process: DNA repair (GO:0006281))
ACD51_3_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(13551..13775)
DNA (225bp) protein (75aa)
13551..13775 - (rbs_motif=TAA rbs_spacer=10bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_3_15

Not on your lists

14081..15862
DNA (1782bp) protein (594aa)
thrS; threonyl-tRNA synthetase
thrS; threonyl-tRNA synthetase
Threonyl-tRNA synthetase n=1 Tax=bacterium Ellin514 RepID=B9XKB7_9BACT (db=UNIREF evalue=0.0 bit_score=702.0 identity=56.77 coverage=98.1481481481482)
thrS: threonyl-tRNA synthetase (db=HMMTigr db_id=TIGR00418 from=14 to=588 evalue=2.1e-238 interpro_id=IPR002320 interpro_description=Threonyl-tRNA synthetase, class IIa GO=Molecular Function: threonine-tRNA ligase activity (GO:0004829), Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: translation (GO:0006412), Biological Process: threonyl-tRNA aminoacylation (GO:0006435))
ACD51_3_16

Not on your lists

comp(15874..19581)
DNA (3708bp) protein (1236aa)
seg (db=Seg db_id=seg from=1203 to=1221)
seg (db=Seg db_id=seg from=20 to=42)
coiled-coil (db=Coil db_id=coil from=651 to=672 evalue=NA)
coiled-coil (db=Coil db_id=coil from=174 to=195 evalue=NA)
ACD51_3_17
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(22000..22926)
DNA (927bp) protein (309aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=285 to=307)
seg (db=Seg db_id=seg from=284 to=307)
seg (db=Seg db_id=seg from=264 to=275)
seg (db=Seg db_id=seg from=180 to=193)
ACD51_3_18
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(22936..24444)
DNA (1509bp) protein (503aa)
seg (db=Seg db_id=seg from=46 to=58)
coiled-coil (db=Coil db_id=coil from=379 to=407 evalue=NA)
coiled-coil (db=Coil db_id=coil from=67 to=88 evalue=NA)
coiled-coil 67..88 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_3_19
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(24446..24943)
DNA (498bp) protein (166aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KTA4_9BACT (db=UNIREF evalue=4.0e-10 bit_score=67.4 identity=25.47 coverage=93.9759036144578)
transmembrane_regions (db=TMHMM db_id=tmhmm from=29 to=48)
transmembrane_regions (db=TMHMM db_id=tmhmm from=52 to=69)
Putative uncharacterized protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_3_20
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(25404..25847)
DNA (444bp) protein (148aa)
hypothetical protein
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=2 to=133 evalue=1.5e-40 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
SSB (db=HMMPfam db_id=PF00436 from=4 to=106 evalue=8.3e-34 interpro_id=IPR000424 interpro_description=Primosome PriB/single-strand DNA-binding GO=Molecular Function: single-stranded DNA binding (GO:0003697))
no description (db=Gene3D db_id=G3DSA:2.40.50.140 from=4 to=143 evalue=1.3e-33 interpro_id=IPR012340 interpro_description=Nucleic acid-binding, OB-fold)
ACD51_3_21
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists


comp(26007..26666)
DNA (660bp) protein (220aa)
rpsF; Ribosomal protein S6
seg (db=Seg db_id=seg from=118 to=195)
seg (db=Seg db_id=seg from=196 to=203)
coiled-coil (db=Coil db_id=coil from=164 to=196 evalue=NA)
ACD51_3_22

Not on your lists

comp(26776..27636)
DNA (861bp) protein (287aa)
HAD-like (db=superfamily db_id=SSF56784 from=17 to=263 evalue=7.5e-16)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=21 to=259 evalue=3.8e-05)
Uncharacterized protein {ECO:0000313|EMBL:EKD63284.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_3_23

Not on your lists

comp(27617..30229)
DNA (2613bp) protein (871aa)
mutS-1; DNA mismatch repair protein MutS
mutS-1; DNA mismatch repair protein MutS
DNA mismatch repair protein MutS n=1 Tax=Thermincola sp. JR RepID=D5XFC1_9FIRM (db=UNIREF evalue=0.0 bit_score=816.0 identity=50.68 coverage=99.4259471871412)
seg (db=Seg db_id=seg from=791 to=804)
ACD51_3_24

Not on your lists

comp(30279..30596)
DNA (318bp) protein (106aa)
hypothetical protein
coiled-coil (db=Coil db_id=coil from=62 to=83 evalue=NA)
seg (db=Seg db_id=seg from=59 to=73)
NIF3 (NGG1p interacting factor 3)-like (db=superfamily db_id=SSF102705 from=3 to=102 evalue=3.0e-25 interpro_id=IPR002678 interpro_description=NGG1p interacting factor 3, NIF3)
ACD51_3_25

Not on your lists

30651..31688
DNA (1038bp) protein (346aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
seg (db=Seg db_id=seg from=33 to=51)
Uncharacterized protein {ECO:0000313|EMBL:EKD63287.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
ACD51_3_26
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(31899..32516)
DNA (618bp) protein (206aa)
SOS-response transcriptional repressor, LexA n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744342 (db=UNIREF evalue=2.0e-31 bit_score=138.0 identity=38.42 coverage=95.1456310679612)
LexA family transcriptional repressor
lexA: repressor LexA (db=HMMTigr db_id=TIGR00498 from=1 to=205 evalue=2.0e-40 interpro_id=IPR006200 interpro_description=Peptidase S24, LexA repressor GO=Molecular Function: serine-type endopeptidase activity (GO:0004252), Biological Process: proteolysis (GO:0006508))
LexA/Signal peptidase (db=superfamily db_id=SSF51306 from=81 to=204 evalue=7.9e-32 interpro_id=IPR015927 interpro_description=Peptidase S24/S26A/S26B/S26C)
ACD51_3_27
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(32535..32699)
DNA (165bp) protein (55aa)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=22)
transmembrane_regions 4..22 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_3_28
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(32872..33120)
DNA (249bp) protein (83aa)
32872..33120 - (rbs_motif=TAA rbs_spacer=11bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_3_29
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

33329..33775
DNA (447bp) protein (149aa)
coiled-coil (db=Coil db_id=coil from=123 to=144 evalue=NA)
coiled-coil 123..144 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
ACD51_3_30
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria

Not on your lists

comp(33805..34086)
DNA (282bp) protein (94aa)
helix-turn-helix domain-containing protein
seg (db=Seg db_id=seg from=8 to=19)
HTH_3 (db=HMMPfam db_id=PF01381 from=34 to=85 evalue=1.1e-16 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
no description (db=HMMSmart db_id=SM00530 from=33 to=88 evalue=3.9e-16 interpro_id=IPR001387 interpro_description=Helix-turn-helix type 3 GO=Molecular Function: sequence-specific DNA binding (GO:0043565))
Displaying items 1-30 of 31 in total

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