Alias: ACD51_82531.17351.9
name | lists | location/seqs | annotations | notes |
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ACD51_55_1
uncultured bacterium, Bacteria
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Not on your lists |
86..634
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GTP cyclohydrolase I
GTP_CYCLOHYDROL_1_1 (db=PatternScan db_id=PS00859 from=60 to=76 evalue=0.0 interpro_id=IPR018234 interpro_description=GTP cyclohydrolase I, conserved site GO=Molecular Function: GTP cyclohydrolase I activity (GO:0003934), Cellular Component: cytoplasm (GO:0005737), Biological Process: tetrahydrofolate biosynthetic process (GO:0046654))
folE: GTP cyclohydrolase I (db=HMMTigr db_id=TIGR00063 from=4 to=182 evalue=2.0e-102 interpro_id=IPR001474 interpro_description=GTP cyclohydrolase I GO=Molecular Function: GTP cyclohydrolase I activity (GO:0003934), Cellular Component: cytoplasm (GO:0005737), Biological Process: tetrahydrofolate biosynthetic process (GO:0046654))
GTP CYCLOHYDROLASE I (db=HMMPanther db_id=PTHR11109 from=9 to=182 evalue=2.5e-94)
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ACD51_55_2
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
637..1242
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Recombination protein recR
recR: recombination protein RecR (db=HMMTigr db_id=TIGR00615 from=3 to=199 evalue=3.6e-100 interpro_id=IPR000093 interpro_description=RecR protein GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
Recombination protein RecR (db=superfamily db_id=SSF111304 from=3 to=201 evalue=2.6e-74 interpro_id=IPR000093 interpro_description=RecR protein GO=Molecular Function: DNA binding (GO:0003677), Biological Process: DNA repair (GO:0006281), Biological Process: DNA recombination (GO:0006310))
no description (db=HMMSmart db_id=SM00493 from=82 to=167 evalue=1.5e-16 interpro_id=IPR006154 interpro_description=Toprim domain, subgroup GO=Molecular Function: nucleic acid binding (GO:0003676), Biological Process: DNA metabolic process (GO:0006259))
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ACD51_55_3
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(1171..2229)
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1171..2229 - (rbs_motif=TAA rbs_spacer=9bp)
hypothetical protein Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_55_4
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(2232..3191)
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seg (db=Seg db_id=seg from=301 to=312)
seg 301..312 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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ACD51_55_5
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(3268..4047)
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ipk; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
seg (db=Seg db_id=seg from=111 to=122)
4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE (db=HMMPanther db_id=PTHR20861:SF2 from=62 to=235 evalue=1.0e-33 interpro_id=IPR004424 interpro_description=4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO=Biological Process: terpenoid biosynthetic process (GO:0016114), Molecular Function: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity (GO:0050515))
HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE (db=HMMPanther db_id=PTHR20861 from=62 to=235 evalue=1.0e-33)
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ACD51_55_6
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(4005..5186)
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hypothetical protein
no description (db=Gene3D db_id=G3DSA:3.90.550.10 from=3 to=236 evalue=5.6e-45)
Nucleotide-diphospho-sugar transferases (db=superfamily db_id=SSF53448 from=1 to=231 evalue=3.1e-44)
IpsF-like (db=superfamily db_id=SSF69765 from=235 to=388 evalue=2.6e-39 interpro_id=IPR003526 interpro_description=2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core GO=Molecular Function: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity (GO:0008685), Biological Process: terpenoid biosynthetic process (GO:0016114))
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ACD51_55_7
uncultured bacterium, Bacteria
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Not on your lists |
comp(5183..5818)
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1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain (db=superfamily db_id=SSF55347 from=1 to=129 evalue=3.0e-53)
DXP_redisom_C (db=HMMPfam db_id=PF08436 from=11 to=94 evalue=1.0e-40 interpro_id=IPR013644 interpro_description=1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO=Biological Process: isoprenoid biosynthetic process (GO:0008299), Molecular Function: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity (GO:0030604), Molecular Function: metal ion binding (GO:0046872), Biological Process: oxidation reduction (GO:0055114))
1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain (db=superfamily db_id=SSF69055 from=150 to=211 evalue=2.2e-07)
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ACD51_55_8
uncultured bacterium, Bacteria
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Not on your lists |
comp(6198..8792)
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seg (db=Seg db_id=seg from=71 to=93)
transmembrane_regions (db=TMHMM db_id=tmhmm from=343 to=365)
transmembrane_regions (db=TMHMM db_id=tmhmm from=398 to=415)
transmembrane_regions (db=TMHMM db_id=tmhmm from=430 to=452)
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ACD51_55_9
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(8789..9823)
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4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LPD8_9FIRM (db=UNIREF evalue=8.0e-77 bit_score=290.0 identity=50.0 coverage=97.3913043478261)
seg (db=Seg db_id=seg from=164 to=173)
seg (db=Seg db_id=seg from=196 to=207)
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ACD51_55_10
uncultured bacterium, Bacteria
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Not on your lists |
9852..10550
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translation initiation factor IF-3
Translation initiation factor IF-3 n=1 Tax=Simonsiella muelleri ATCC 29453 RepID=D6KWK8_9NEIS (db=UNIREF evalue=4.0e-31 bit_score=138.0 identity=45.25 coverage=76.3948497854077)
seg (db=Seg db_id=seg from=127 to=151)
IF3 (db=PatternScan db_id=PS00938 from=121 to=134 evalue=0.0 interpro_id=IPR019813 interpro_description=Translation initiation factor 3, conserved site GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
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ACD51_55_11
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
10575..10769
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RIBOSOMAL_L35 (db=PatternScan db_id=PS00936 from=5 to=31 evalue=0.0 interpro_id=IPR018265 interpro_description=Ribosomal protein L35, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
L35p-like (db=superfamily db_id=SSF143034 from=2 to=62 evalue=1.8e-14)
Ribosomal_L35p (db=HMMPfam db_id=PF01632 from=3 to=61 evalue=1.0e-13 interpro_id=IPR021137 interpro_description=Ribosomal protein L35 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMALL35 (db=FPrintScan db_id=PR00064 from=3 to=20 evalue=7.8e-11 interpro_id=IPR001706 interpro_description=Ribosomal protein L35, non-mitochondrial GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD51_55_12
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
10797..11147
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rplT; 50S ribosomal protein L20
seg (db=Seg db_id=seg from=3 to=16)
seg (db=Seg db_id=seg from=35 to=42)
rplT_bact: ribosomal protein L20 (db=HMMTigr db_id=TIGR01032 from=1 to=114 evalue=2.4e-47 interpro_id=IPR005813 interpro_description=Ribosomal protein L20 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412), Molecular Function: rRNA binding (GO:0019843))
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ACD51_55_13
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
comp(11248..11520)
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Acylphosphatase n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U9S5_9DELT (db=UNIREF evalue=2.0e-13 bit_score=78.2 identity=40.91 coverage=95.6043956043956)
acylphosphatase
ACYLPHOSPHATASE_2 (db=PatternScan db_id=PS00151 from=32 to=48 evalue=0.0 interpro_id=IPR017968 interpro_description=Acylphosphatase, conserved site)
ACYLPHOSPHATASE_1 (db=PatternScan db_id=PS00150 from=8 to=18 evalue=0.0 interpro_id=IPR017968 interpro_description=Acylphosphatase, conserved site)
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ACD51_55_14
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
11541..12992
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UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMYL-2,6-DIAMINOPIMELATE--D-ALANYL-D- ALANYL LIGASE (db=HMMPanther db_id=PTHR23135:SF3 from=87 to=468 evalue=2.1e-69 interpro_id=IPR005863 interpro_description=UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase GO=Molecular Function: ATP binding (GO:0005524), Cellular Component: cytoplasm (GO:0005737), Biological Process: regulation of cell shape (GO:0008360), Molecular Function: UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activ
MUR LIGASE FAMILY MEMBER (db=HMMPanther db_id=PTHR23135 from=87 to=468 evalue=2.1e-69)
no description (db=Gene3D db_id=G3DSA:3.40.1190.10 from=63 to=318 evalue=1.1e-42 interpro_id=IPR013221 interpro_description=Mur ligase, central GO=Molecular Function: ATP binding (GO:0005524), Biological Process: biosynthetic process (GO:0009058))
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ACD51_55_15
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
13089..13463
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plastocyanin
COPPER_BLUE (db=PatternScan db_id=PS00196 from=104 to=116 evalue=0.0 interpro_id=IPR000923 interpro_description=Blue (type 1) copper domain GO=Molecular Function: copper ion binding (GO:0005507), Molecular Function: electron carrier activity (GO:0009055))
Cupredoxins (db=superfamily db_id=SSF49503 from=26 to=123 evalue=7.6e-24 interpro_id=IPR008972 interpro_description=Cupredoxin)
no description (db=Gene3D db_id=G3DSA:2.60.40.420 from=26 to=123 evalue=2.1e-23 interpro_id=IPR008972 interpro_description=Cupredoxin)
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Has blue Cu protein domain
Jill Banfield
(11/15/12)
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ACD51_55_16
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
13460..14314
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hypothetical protein (db=KEGG evalue=5.0e-19 bit_score=98.6 identity=34.62 coverage=60.0)
Flavoproteins (db=superfamily db_id=SSF52218 from=27 to=269 evalue=4.3e-28)
FMN_red (db=HMMPfam db_id=PF03358 from=28 to=225 evalue=4.0e-22 interpro_id=IPR005025 interpro_description=NADPH-dependent FMN reductase)
no description (db=Gene3D db_id=G3DSA:3.40.50.360 from=27 to=260 evalue=3.4e-20)
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Possible cytochrome: CYSTTNAHCH
Jill Banfield
(11/15/12)
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ACD51_55_17
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
14386..15369
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DNA polymerase III, delta' subunit
seg (db=Seg db_id=seg from=247 to=257)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=7 to=208 evalue=3.0e-41)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=7 to=160 evalue=2.9e-37)
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ACD51_55_18
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
15379..16239
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PSP1 domain-containing protein
Signal peptidase II n=1 Tax=Oribacterium sinus F0268 RepID=C2L0X1_9FIRM (db=UNIREF evalue=4.0e-40 bit_score=168.0 identity=36.78 coverage=88.1533101045296)
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B (db=HMMPanther db_id=PTHR21600 from=81 to=225 evalue=9.3e-41)
RIBOSOMAL LARGE SUBUNIT PSEUDOURIDINE SYNTHASE B-RELATED (db=HMMPanther db_id=PTHR21600:SF3 from=81 to=225 evalue=9.3e-41)
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ACD51_55_19
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
16244..17014
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hypothetical protein
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
seg (db=Seg db_id=seg from=57 to=72)
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=75 to=247 evalue=1.4e-24 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
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ACD51_55_20
RIFOXYC2_FULL_Peregrinibacteria_41_22_curated, Peregrinibacteria, Bacteria
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Not on your lists |
17149..17388
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17149..17388 + (rbs_motif=TAA rbs_spacer=8bp)
coiled-coil 3..24 Tax=RIFOXYC2_FULL_Peregrinibacteria_41_22_curated
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